Gm7504 Pseudogene Detail

Summary

• Symbol
  Gm7504
• Name
  predicted gene 7504

• Feature Type
  pseudogene
• IDs
  MGI:3643241
  NCBI Gene: 665125
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:38261461-38261884 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 17.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643241	pseudogene	Chr6:38261380-38261944 (+)
129S1/SvImJ	ENSMUSG00200046117	pseudogene	Chr6:35316712-35317135 (+)
A/J	ENSMUSG00195043259	pseudogene	Chr6:35288386-35288809 (+)
AKR/J	ENSMUSG00220009160	pseudogene	Chr6:34887037-34887460 (+)
BALB/cJ	ENSMUSG00180047916	pseudogene	Chr6:35416838-35417261 (+)
C3H/HeJ	ENSMUSG00175049185	pseudogene	Chr6:35238755-35239178 (+)
C57BL/6NJ	ENSMUSG00215048598	pseudogene	Chr6:35323226-35323649 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009378	pseudogene	Chr1:173873519-173873949 (-)
CAST/EiJ	ENSTCUG00005038208	pseudogene	Chr6:34820592-34821015 (+)
CBA/J	ENSMUSG00210052296	pseudogene	Chr6:35295985-35296408 (+)
DBA/2J	ENSMUSG00185049193	pseudogene	Chr6:35396548-35396971 (+)
FVB/NJ	ENSMUSG00205049739	pseudogene	Chr6:35372878-35373301 (+)
JF1/MsJ	ENSUMUG00000030554	pseudogene	Chr6:35045106-35045529 (+)
LP/J	ENSMUSG00230043965	pseudogene	Chr6:36322287-36322710 (+)
NOD/ShiLtJ	ENSMUSG00190049226	pseudogene	Chr6:35162768-35163191 (+)
NZO/HlLtJ	ENSMUSG00225009771	pseudogene	Chr6:38304885-38305308 (+)
PWK/PhJ	ENSLUMG00010045979	pseudogene	Chr6:34819680-34820103 (+)
SPRET/EiJ	ENSMSPG00010033956	pseudogene	Chr6:35423181-35423604 (+)
WSB/EiJ	ENSIUOG00005033447	pseudogene	Chr6:35499892-35500315 (+)

Homology

• Gene Tree
  Gm7504
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000107026 (Evidence)
• NCBI Gene
  665125

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107026	Ensembl Gene Model | MGI Sequence Detail	424	C57BL/6J
transcript	ENSMUST00000201449	Ensembl | MGI Sequence Detail	424	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm7504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55634	Chr6:38261405-38261407 (+)	-55 bp