Gm5645 Pseudogene Detail

Summary

• Symbol
  Gm5645
• Name
  predicted pseudogene 5645

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643221
  NCBI Gene: 434874
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:152913954-152916967 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643221	pseudogene	ChrX:152913832-152918446 (-)
129S1/SvImJ	ENSMUSG00200032603	protein coding gene	ChrX:129662844-129667176 (-)
A/J	ENSMUSG00195037968	protein coding gene	ChrX:134690393-134694725 (-)
A/J	ENSMUSG00195039242	pseudogene	ChrX:134741806-134744819 (-)
AKR/J	ENSMUSG00220034076	pseudogene	ChrX:126579129-126579170 (-)
BALB/cJ	ENSMUSG00180035141	protein coding gene	ChrX:130060371-130064701 (-)
BALB/cJ	ENSMUSG00180041785	pseudogene	ChrX:130111798-130114811 (-)
C3H/HeJ	ENSMUSG00175026408	protein coding gene	ChrX:134635862-134640194 (-)
C3H/HeJ	ENSMUSG00175026665	pseudogene	ChrX:134687247-134690260 (-)
C57BL/6NJ	ENSMUSG00215033087	pseudogene	ChrX:130341266-130341952 (-)
C57BL/6NJ	ENSMUSG00215032498	pseudogene	ChrX:130480555-130483568 (-)
C57BL/6NJ	ENSMUSG00215016443	protein coding gene	ChrX:130376721-130381050 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033812	pseudogene	ChrX:132398409-132401231 (-)
CBA/J	ENSMUSG00210039153	pseudogene	ChrX:132020606-132020645 (-)
DBA/2J	ENSMUSG00185046853	pseudogene	ChrX:146849335-146850021 (-)
DBA/2J	ENSMUSG00185044237	protein coding gene	ChrX:146906038-146910367 (-)
DBA/2J	ENSMUSG00185045654	pseudogene	ChrX:146957437-146960450 (-)
FVB/NJ	ENSMUSG00205031818	pseudogene	ChrX:130568416-130569102 (-)
FVB/NJ	ENSMUSG00205029253	pseudogene	ChrX:130611150-130614154 (-)
JF1/MsJ	ENSUMUG00000047487	pseudogene	ChrX:167202339-167205150 (-)
JF1/MsJ	ENSUMUG00000047276	pseudogene	ChrX:167173585-167176394 (-)
JF1/MsJ	ENSUMUG00000046783	pseudogene	ChrX:167025973-167057666 (-)
JF1/MsJ	ENSUMUG00000047443	pseudogene	ChrX:167187967-167190776 (-)
JF1/MsJ	ENSUMUG00000047298	pseudogene	ChrX:167231046-167233855 (-)
LP/J	ENSMUSG00230014023	pseudogene	ChrX:153740834-153743847 (-)
LP/J	ENSMUSG00230014703	pseudogene	ChrX:153632733-153633419 (-)
LP/J	ENSMUSG00230011171	protein coding gene	ChrX:153689436-153693765 (-)
NOD/ShiLtJ	ENSMUSG00190042926	pseudogene	ChrX:131153157-131153843 (-)
NOD/ShiLtJ	ENSMUSG00190041966	pseudogene	ChrX:131175458-131178471 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035835	pseudogene	ChrX:128584471-128587282 (-)
SPRET/EiJ	ENSMSPG00010041661	pseudogene	ChrX:133460709-133460743 (-)
WSB/EiJ	ENSIUOG00005042060	pseudogene	ChrX:131574532-131577544 (-)

Homology

• Gene Tree
  Gm5645
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000093899 (Evidence)
• NCBI Gene
  434874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093899	Ensembl Gene Model | MGI Sequence Detail	3014	C57BL/6J
transcript	ENSMUST00000179597	Ensembl | MGI Sequence Detail	714	Not Applicable
polypeptide	NP_001369321	RefSeq | MGI Sequence Detail	233	C57BL/6

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;