Gm5646 Pseudogene Detail

Summary

• Symbol
  Gm5646
• Name
  predicted pseudogene 5646

• Feature Type
  pseudogene
• IDs
  MGI:3643220
  NCBI Gene: 434879
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:153182574-153185040 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643220	pseudogene	ChrX:153181243-153185158 (+)
129S1/SvImJ	ENSMUSG00200033541	pseudogene	ChrX:129909851-129912317 (+)
A/J	ENSMUSG00195039092	pseudogene	ChrX:135010444-135012910 (+)
AKR/J	ENSMUSG00220034108	pseudogene	ChrX:126833442-126835908 (+)
BALB/cJ	ENSMUSG00180039800	pseudogene	ChrX:130380421-130382887 (+)
C3H/HeJ	ENSMUSG00175027600	pseudogene	ChrX:134955881-134958347 (+)
C57BL/6NJ	ENSMUSG00215031979	pseudogene	ChrX:130749196-130751662 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033510	pseudogene	ChrX:132568208-132570674 (+)
CBA/J	ENSMUSG00210038156	pseudogene	ChrX:132260605-132263071 (+)
DBA/2J	ENSMUSG00185045262	pseudogene	ChrX:147226082-147228548 (+)
FVB/NJ	ENSMUSG00205027702	pseudogene	ChrX:130882251-130884717 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230014453	pseudogene	ChrX:154009447-154011913 (+)
NOD/ShiLtJ	ENSMUSG00190042755	pseudogene	ChrX:131465634-131468100 (+)
NZO/HlLtJ	ENSMUSG00225042783	pseudogene	ChrX:157440029-157442495 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010041031	pseudogene	ChrX:133710026-133712493 (+)
WSB/EiJ	ENSIUOG00005039995	pseudogene	ChrX:131852002-131854468 (+)

Homology

• Gene Tree
  Gm5646
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000081502 (Evidence)
• NCBI Gene
  434879

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081502	Ensembl Gene Model | MGI Sequence Detail	2467	C57BL/6J
transcript	ENSMUST00000120568	Ensembl | MGI Sequence Detail	714	Not Applicable
polypeptide	NP_001434106	RefSeq | MGI Sequence Detail	233	C57BL/6

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5707	ChrX:153181205-153181244 (+)	-1,349 bp