Gm9991 Gene Detail

Summary

• Symbol
  Gm9991
• Name
  predicted gene 9991
• Synonyms
  EG433332

• Feature Type
  lncRNA gene
• IDs
  MGI:3643217
  NCBI Gene: 433332
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:90588683-90607377 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 45.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  661 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643217	lncRNA gene	Chr1:90588683-90607518 (+)
129S1/SvImJ	ENSMUSG00200038068	lncRNA gene	Chr1:87832923-87837547 (+)
A/J	ENSMUSG00195035678	lncRNA gene	Chr1:87393794-87398426 (+)
AKR/J	ENSMUSG00220045902	lncRNA gene	Chr1:87542210-87546834 (+)
BALB/cJ	ENSMUSG00180018994	lncRNA gene	Chr1:87700172-87704804 (+)
C3H/HeJ	ENSMUSG00175001562	lncRNA gene	Chr1:87575152-87579786 (+)
C57BL/6NJ	ENSMUSG00215037470	lncRNA gene	Chr1:87503164-87507796 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004448	lincRNA gene	Chr1:83143074-83147726 (+)
CAST/EiJ	ENSTCUG00005007829	lncRNA gene	Chr1:87144956-87149595 (+)
CBA/J	ENSMUSG00210012460	lncRNA gene	Chr1:87420488-87425122 (+)
DBA/2J	ENSMUSG00185014432	lncRNA gene	Chr1:91886610-91891242 (+)
FVB/NJ	ENSMUSG00205045638	lncRNA gene	Chr1:86825023-86829648 (+)
JF1/MsJ	ENSUMUG00000019421	lncRNA gene	Chr1:90637481-90642114 (+)
LP/J	ENSMUSG00230020814	lncRNA gene	Chr1:91169121-91173745 (+)
NOD/ShiLtJ	ENSMUSG00190034768	lncRNA gene	Chr1:87467866-87472498 (+)
NZO/HlLtJ	ENSMUSG00225004123	lncRNA gene	Chr1:95065280-95069904 (+)
PWK/PhJ	ENSLUMG00010046449	lncRNA gene	Chr1:87028082-87032715 (+)
SPRET/EiJ	ENSMSPG00010048216	lncRNA gene	Chr1:89054723-89059333 (+)
WSB/EiJ	ENSIUOG00005042132	lncRNA gene	Chr1:87129643-87134277 (+)

Homology

• Gene Tree
  Gm9991
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9991
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000056128 (Evidence)
• NCBI Gene
  433332

Representative Sequences			Length	Strain/Species
genomic	433332	NCBI Gene Model | MGI Sequence Detail	18695	C57BL/6J
transcript	AK039913	GenBank | ENA | DDBJ | MGI Sequence Detail	1209	C57BL/6J
polypeptide	Q8CA16	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45