Gm5537 Pseudogene Detail

Summary

• Symbol
  Gm5537
• Name
  predicted gene 5537

• Feature Type
  pseudogene
• IDs
  MGI:3643179
  NCBI Gene: 433594
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:58010417-58011668 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 28.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643179	pseudogene	Chr3:58009979-58011717 (-)
129S1/SvImJ	ENSMUSG00200023639	pseudogene	Chr3:54881634-54882885 (-)
A/J	ENSMUSG00195032885	pseudogene	Chr3:54798380-54799631 (-)
AKR/J	ENSMUSG00220030339	pseudogene	Chr3:54851461-54852712 (-)
BALB/cJ	ENSMUSG00180025925	pseudogene	Chr3:54878143-54879394 (-)
C3H/HeJ	ENSMUSG00175008759	pseudogene	Chr3:54719521-54720772 (-)
C57BL/6NJ	ENSMUSG00215009417	pseudogene	Chr3:55163601-55164852 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011124	pseudogene	Chr3:148156610-148157855 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210004133	pseudogene	Chr3:54835243-54836494 (-)
DBA/2J	ENSMUSG00185028082	pseudogene	Chr3:55004899-55006150 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004516	pseudogene	Chr3:57018353-57019604 (-)
NOD/ShiLtJ	ENSMUSG00190032178	pseudogene	Chr3:55196279-55197530 (-)
NZO/HlLtJ	ENSMUSG00225018552	pseudogene	Chr3:59630809-59632060 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005009152	pseudogene	Chr3:54967348-54968599 (-)

Homology

• Gene Tree
  Gm5537
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm5537
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000069008 (Evidence)
• NCBI Gene
  433594

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069008	Ensembl Gene Model | MGI Sequence Detail	1252	C57BL/6J
transcript	ENSMUST00000091117	Ensembl | MGI Sequence Detail	1252	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 2
• Earliest
  J:37006 Potten H, et al., Molecular cloning and sequencing of a murine pgk-1 pseudogene family. Gene. 1988 Nov 30;71(2):461-71
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426