Gm6189 Pseudogene Detail

Summary

• Symbol
  Gm6189
• Name
  predicted gene 6189

• Feature Type
  pseudogene
• IDs
  MGI:3643154
  NCBI Gene: 620899
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:80360824-80362902 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 41.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643154	pseudogene	Chr1:80360821-80362902 (-)
129S1/SvImJ	ENSMUSG00200035538	pseudogene	Chr1:78035445-78037526 (-)
A/J	ENSMUSG00195010748	pseudogene	Chr1:77445897-77447978 (-)
AKR/J	ENSMUSG00220010840	pseudogene	Chr1:77615754-77617835 (-)
BALB/cJ	ENSMUSG00180021512	pseudogene	Chr1:77708400-77710481 (-)
C3H/HeJ	ENSMUSG00175018498	pseudogene	Chr1:77852392-77854473 (-)
C57BL/6NJ	ENSMUSG00215029156	pseudogene	Chr1:77756729-77758810 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029562	pseudogene	Chr1:77393883-77395964 (-)
CBA/J	ENSMUSG00210041924	pseudogene	Chr1:77624670-77626751 (-)
DBA/2J	ENSMUSG00185033843	pseudogene	Chr1:78670755-78672836 (-)
FVB/NJ	ENSMUSG00205041294	pseudogene	Chr1:77168659-77170740 (-)
JF1/MsJ	ENSUMUG00000006730	pseudogene	Chr1:77466880-77468958 (-)
LP/J	ENSMUSG00230014462	pseudogene	Chr1:78608474-78610555 (-)
NOD/ShiLtJ	ENSMUSG00190042085	pseudogene	Chr1:77828285-77830366 (-)
NZO/HlLtJ	ENSMUSG00225040920	pseudogene	Chr1:81835719-81837800 (-)
PWK/PhJ	ENSLUMG00010013738	pseudogene	Chr1:77070703-77072781 (-)
SPRET/EiJ	ENSMSPG00010020182	pseudogene	Chr1:79236631-79238704 (-)
WSB/EiJ	ENSIUOG00005014209	pseudogene	Chr1:77365753-77367834 (-)

Homology

• Gene Tree
  Gm6189
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6189
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090637 (Evidence)
• NCBI Gene
  620899

Representative Sequences			Length	Strain/Species
genomic	620899	NCBI Gene Model | MGI Sequence Detail	2079	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6189:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12470	Chr1:80363092-80363099 (-)	-194 bp