Gm9946 Gene Detail

Summary

• Symbol
  Gm9946
• Name
  predicted gene 9946
• Synonyms
  EG330403

• Feature Type
  lncRNA gene
• IDs
  MGI:3643134
  NCBI Gene: 330403
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:117536658-117549290 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 55.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  586 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643134	lncRNA gene	Chr6:117536403-117549290 (+)
129S1/SvImJ	ENSMUSG00200051875	lncRNA gene	Chr6:114744231-114756865 (+)
A/J	ENSMUSG00195049002	lncRNA gene	Chr6:114144359-114156997 (+)
AKR/J	ENSMUSG00220035030	lncRNA gene	Chr6:113030278-113042912 (+)
BALB/cJ	ENSMUSG00180050453	lncRNA gene	Chr6:114512061-114524696 (+)
C3H/HeJ	ENSMUSG00175034746	lncRNA gene	Chr6:62945347-62957981 (-)
C57BL/6NJ	ENSMUSG00215048664	lncRNA gene	Chr6:114502261-114514894 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006417	lincRNA gene	Chr6:112610841-112624720 (+)
CAST/EiJ	ENSTCUG00005051509	lncRNA gene	Chr6:114325772-114338364 (+)
CBA/J	ENSMUSG00210046073	lncRNA gene	Chr6:114279404-114292040 (+)
DBA/2J	ENSMUSG00185048389	lncRNA gene	Chr6:114937685-114950318 (+)
FVB/NJ	ENSMUSG00205051989	lncRNA gene	Chr6:113426445-113445410 (+)
JF1/MsJ	ENSUMUG00000055057	lncRNA gene	Chr6:113551301-113570251 (+)
LP/J	ENSMUSG00230049352	lncRNA gene	Chr6:116141777-116154409 (+)
NOD/ShiLtJ	ENSMUSG00190051092	lncRNA gene	Chr6:113891712-113904354 (+)
NZO/HlLtJ	ENSMUSG00225047795	lncRNA gene	Chr6:117997598-118010230 (+)
PWK/PhJ	ENSLUMG00010050136	lncRNA gene	Chr6:112902420-112921546 (+)
SPRET/EiJ	ENSMSPG00010047336	lncRNA gene	Chr6:115707091-115719869 (+)
WSB/EiJ	ENSIUOG00005045873	lncRNA gene	Chr6:114576406-114589041 (+)

Homology

• Gene Tree
  Gm9946
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054488 (Evidence)
• NCBI Gene
  330403

Representative Sequences			Length	Strain/Species
genomic	330403	NCBI Gene Model | MGI Sequence Detail	12633	C57BL/6J
transcript	NR_168036	RefSeq | MGI Sequence Detail	1580	C57BL/6
polypeptide	Q8C7M1	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm9946:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58445	Chr6:117536655-117536661 (+)	0 bp