Gm8186 Pseudogene Detail

Summary

• Symbol
  Gm8186
• Name
  predicted gene 8186

• Feature Type
  pseudogene
• IDs
  MGI:3643110
  NCBI Gene: 666609
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26317965-26318195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643110	pseudogene	Chr17:26317846-26318231 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195054696	pseudogene	Chr17:22785421-22785651 (-)
A/J	ENSMUSG00195046491	pseudogene	Chr4:128835022-128835252 (-)
A/J	ENSMUSG00195054698	pseudogene	Chr17:22790580-22790810 (-)
A/J	ENSMUSG00195054469	pseudogene	Chr17:22780267-22780497 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215054340	pseudogene	Chr17:21827577-21827807 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185055717	pseudogene	Chr17:23873656-23873886 (-)
DBA/2J	ENSMUSG00185053767	pseudogene	Chr4:128648753-128648983 (-)
DBA/2J	ENSMUSG00185053528	pseudogene	Chr17:23868503-23868733 (-)
DBA/2J	ENSMUSG00185055723	pseudogene	Chr17:23878815-23879045 (-)
FVB/NJ	ENSMUSG00205053424	pseudogene	Chr17:22124222-22124452 (-)
FVB/NJ	ENSMUSG00205053839	pseudogene	Chr17:22129386-22129616 (-)
FVB/NJ	ENSMUSG00205053843	pseudogene	Chr17:22134533-22134763 (-)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190054167	pseudogene	Chr17:21757220-21757450 (-)
NOD/ShiLtJ	ENSMUSG00190054494	pseudogene	Chr17:21767533-21767763 (-)
NOD/ShiLtJ	ENSMUSG00190054493	pseudogene	Chr17:21762373-21762603 (-)
NOD/ShiLtJ	ENSMUSG00190050741	pseudogene	Chr4:126881079-126881309 (-)
NZO/HlLtJ	ENSMUSG00225054870	pseudogene	Chr17:27192723-27192953 (-)
NZO/HlLtJ	ENSMUSG00225054419	pseudogene	Chr17:27187569-27187799 (-)
NZO/HlLtJ	ENSMUSG00225054872	pseudogene	Chr17:27197878-27198108 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8186
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm8186
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000049124 (Evidence)
• NCBI Gene
  666609

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049124	Ensembl Gene Model | MGI Sequence Detail	231	C57BL/6J
transcript	ENSMUST00000053575	Ensembl | MGI Sequence Detail	231	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm8186:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146918	Chr17:26318231-26318233 (-)	-37 bp