Gm6942 Pseudogene Detail

Summary

• Symbol
  Gm6942
• Name
  predicted gene 6942

• Feature Type
  pseudogene
• IDs
  MGI:3643094
  NCBI Gene: 629043
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:55974737-55976090 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643094	pseudogene	Chr18:55974641-55976250 (+)
129S1/SvImJ	ENSMUSG00200033970	pseudogene	Chr18:53028609-53029962 (+)
A/J	ENSMUSG00195005788	pseudogene	Chr18:53157105-53158458 (+)
AKR/J	ENSMUSG00220016542	pseudogene	Chr18:53142788-53144141 (+)
BALB/cJ	ENSMUSG00180012860	pseudogene	Chr18:53728072-53729425 (+)
C3H/HeJ	ENSMUSG00175037518	pseudogene	Chr18:53343060-53344413 (+)
C57BL/6NJ	ENSMUSG00215039519	pseudogene	Chr18:52703113-52704466 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027926	pseudogene	Chr18:52569239-52570599 (+)
CBA/J	ENSMUSG00210033909	pseudogene	Chr18:53287929-53289282 (+)
DBA/2J	ENSMUSG00185015569	pseudogene	Chr18:53194845-53196198 (+)
FVB/NJ	ENSMUSG00205019042	pseudogene	Chr18:52624542-52625895 (+)
JF1/MsJ	ENSUMUG00000034976	pseudogene	Chr18:53113392-53114740 (+)
LP/J	ENSMUSG00230012040	pseudogene	Chr18:55207720-55209073 (+)
NOD/ShiLtJ	ENSMUSG00190033606	pseudogene	Chr18:52905629-52906982 (+)
NZO/HlLtJ	ENSMUSG00225035619	pseudogene	Chr18:55087487-55088840 (+)
NZO/HlLtJ	ENSMUSG00225021278	pseudogene	Chr8:137826660-137828013 (+)
PWK/PhJ	ENSLUMG00010008449	pseudogene	Chr18:53253282-53254630 (+)
SPRET/EiJ	ENSMSPG00010018351	pseudogene	Chr18:53625681-53627045 (+)
WSB/EiJ	ENSIUOG00005010067	pseudogene	Chr18:52841854-52843207 (+)

Homology

• Gene Tree
  Gm6942
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm6942
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000118348 (Evidence)
• NCBI Gene
  629043

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118348	Ensembl Gene Model | MGI Sequence Detail	1354	C57BL/6J
transcript	ENSMUST00000235726	Ensembl | MGI Sequence Detail	1354	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67