Gm16476 Pseudogene Detail

Summary

• Symbol
  Gm16476
• Name
  predicted pseudogene 16476

• Feature Type
  pseudogene
• IDs
  MGI:3643076
  NCBI Gene: 100043377
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:20665303-20665441 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643076	pseudogene	Chr12:20665033-20665441 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195019207	pseudogene	Chr12:16278677-16278815 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175005906	pseudogene	Chr12:15049960-15050098 (+)
C57BL/6NJ	ENSMUSG00215005774	pseudogene	Chr12:15767820-15767956 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005722	pseudogene	Chr12:15607756-15607894 (-)
CBA/J	ENSMUSG00210008263	pseudogene	Chr12:16459443-16459581 (+)
DBA/2J	ENSMUSG00185003988	pseudogene	Chr12:17837849-17837987 (-)
FVB/NJ	ENSMUSG00205001927	pseudogene	Chr12:14840020-14840158 (+)
JF1/MsJ	ENSUMUG00000008257	pseudogene	Chr12:17594067-17594205 (+)
LP/J	ENSMUSG00230007474	pseudogene	Chr12:20788656-20788794 (-)
LP/J	ENSMUSG00230008034	pseudogene	Chr12:24804523-24804661 (-)
NOD/ShiLtJ	ENSMUSG00190014266	pseudogene	Chr12:16256777-16256915 (+)
NZO/HlLtJ	ENSMUSG00225034534	pseudogene	Chr12:22990836-22990974 (-)
NZO/HlLtJ	ENSMUSG00225035387	pseudogene	Chr12:26987622-26987760 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16476
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000114129 (Evidence)
• NCBI Gene
  100043377

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114129	Ensembl Gene Model | MGI Sequence Detail	139	C57BL/6J
transcript	ENSMUST00000221544	Ensembl | MGI Sequence Detail	139	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;