Gm6386 Pseudogene Detail

Summary

• Symbol
  Gm6386
• Name
  predicted gene 6386

• Feature Type
  pseudogene
• IDs
  MGI:3643067
  NCBI Gene: 623030
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:7953205-7955404 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 5.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643067	pseudogene	Chr19:7953100-7955704 (+)
129S1/SvImJ	ENSMUSG00200052698	pseudogene	Chr19:4678792-4680991 (+)
A/J	ENSMUSG00195053683	pseudogene	Chr19:5080309-5082508 (+)
AKR/J	ENSMUSG00220051014	pseudogene	Chr19:4853555-4855754 (+)
BALB/cJ	ENSMUSG00180051895	pseudogene	Chr19:5444276-5446475 (+)
C3H/HeJ	ENSMUSG00175015338	pseudogene	Chr19:4718096-4720295 (+)
C57BL/6NJ	ENSMUSG00215047817	pseudogene	Chr19:4919242-4921441 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045212	pseudogene	Chr19:4821861-4824061 (+)
CBA/J	ENSMUSG00210050594	pseudogene	Chr19:4725252-4727451 (+)
DBA/2J	ENSMUSG00185052963	pseudogene	Chr19:5079926-5082125 (+)
FVB/NJ	ENSMUSG00205053633	pseudogene	Chr19:5065057-5067256 (+)
JF1/MsJ	ENSUMUG00000056572	pseudogene	Chr19:5031772-5033974 (+)
LP/J	ENSMUSG00230054190	pseudogene	Chr19:6005483-6007682 (+)
NOD/ShiLtJ	ENSMUSG00190053160	pseudogene	Chr19:4613919-4616118 (+)
NZO/HlLtJ	ENSMUSG00225027079	pseudogene	Chr19:9714304-9716503 (+)
PWK/PhJ	ENSLUMG00010008743	pseudogene	Chr19:4819267-4821469 (+)
SPRET/EiJ	ENSMSPG00010051389	pseudogene	Chr19:4779929-4782131 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6386
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118036 (Evidence)
• NCBI Gene
  623030

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118036	Ensembl Gene Model | MGI Sequence Detail	2200	C57BL/6J
transcript	ENSMUST00000236487	Ensembl | MGI Sequence Detail	2200	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;