Gm5526 Pseudogene Detail

Summary

• Symbol
  Gm5526
• Name
  predicted pseudogene 5526

• Feature Type
  pseudogene
• IDs
  MGI:3643066
  NCBI Gene: 433297
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:45896492-45896914 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643066	pseudogene	Chr1:45896348-45896914 (-)
129S1/SvImJ	ENSMUSG00200001973	pseudogene	Chr1:43538634-43539056 (-)
A/J	ENSMUSG00195002082	pseudogene	Chr1:43274003-43274425 (-)
AKR/J	ENSMUSG00220003564	pseudogene	Chr1:43163294-43163716 (-)
BALB/cJ	ENSMUSG00180003251	pseudogene	Chr1:43243364-43243786 (-)
C3H/HeJ	ENSMUSG00175000189	pseudogene	Chr1:43305227-43305649 (-)
C57BL/6NJ	ENSMUSG00215003161	pseudogene	Chr1:43219795-43220217 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210029811	pseudogene	Chr1:43001813-43002235 (-)
DBA/2J	ENSMUSG00185030077	pseudogene	Chr1:44128567-44128989 (-)
FVB/NJ	ENSMUSG00205004398	pseudogene	Chr1:43158754-43159176 (-)
JF1/MsJ	ENSUMUG00000002095	pseudogene	Chr1:43169646-43170068 (-)
LP/J	ENSMUSG00230001469	pseudogene	Chr1:44119641-44120063 (-)
NOD/ShiLtJ	ENSMUSG00190002638	pseudogene	Chr1:43185513-43185935 (-)
NZO/HlLtJ	ENSMUSG00225001076	pseudogene	Chr1:47354774-47355196 (-)
PWK/PhJ	ENSLUMG00010002855	pseudogene	Chr1:42734404-42734826 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003712	pseudogene	Chr1:43097142-43097564 (-)

Homology

• Gene Tree
  Gm5526
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5526
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084817 (Evidence)
• NCBI Gene
  433297

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084817	Ensembl Gene Model | MGI Sequence Detail	423	C57BL/6J
transcript	ENSMUST00000153604	Ensembl | MGI Sequence Detail	423	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;