Gm5464 Gene Detail

Summary

• Symbol
  Gm5464
• Name
  predicted gene 5464

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3643060
  NCBI Gene: 432870
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:67106299-67108454 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 34.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643060	protein coding gene	Chr14:67106299-67109172 (+)
129S1/SvImJ	ENSMUSG00200031973	lncRNA gene	Chr14:55715522-55718387 (+)
A/J	ENSMUSG00195016095	lncRNA gene	Chr14:55887350-55890211 (+)
AKR/J	ENSMUSG00220034159	lncRNA gene	Chr14:55228039-55230900 (+)
BALB/cJ	ENSMUSG00180037123	lncRNA gene	Chr14:55503569-55506430 (+)
C3H/HeJ	ENSMUSG00175040500	lncRNA gene	Chr14:57251975-57254839 (+)
C57BL/6NJ	ENSMUSG00215026932	lncRNA gene	Chr14:55441143-55444016 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019443	protein coding gene	Chr14:58018251-58020386 (+)
CAST/EiJ	ENSTCUG00005040027	lncRNA gene	Chr14:57144630-57147516 (+)
CBA/J	ENSMUSG00210042567	lncRNA gene	Chr14:55876141-55879002 (+)
DBA/2J	ENSMUSG00185024086	lncRNA gene	Chr14:61049818-61052681 (+)
FVB/NJ	ENSMUSG00205040447	lncRNA gene	Chr14:55390211-55393072 (+)
JF1/MsJ	ENSUMUG00000042088	lncRNA gene	Chr14:72216709-72219567 (+)
LP/J	ENSMUSG00230036832	lncRNA gene	Chr14:73079028-73081891 (+)
NOD/ShiLtJ	ENSMUSG00190043936	lncRNA gene	Chr14:55669350-55672211 (+)
NZO/HlLtJ	ENSMUSG00225040495	lncRNA gene	Chr14:63402227-63405088 (+)
PWK/PhJ	ENSLUMG00010038239	lncRNA gene	Chr14:55096037-55098899 (+)
SPRET/EiJ	ENSMSPG00010036620	lncRNA gene	Chr14:58612207-58615139 (+)
WSB/EiJ	ENSIUOG00005041613	lncRNA gene	Chr14:55106933-55109794 (+)

Homology

• Gene Tree
  Gm5464
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5464
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS49528.1

• Ensembl
  ENSMUSG00000075553 (Evidence)
• NCBI Gene
  432870

Representative Sequences			Length	Strain/Species
genomic	432870	NCBI Gene Model | MGI Sequence Detail	2156	C57BL/6J
transcript	NR_157372	RefSeq | MGI Sequence Detail	2156	C57BL/6
polypeptide	Q3UY29	UniProt | EBI | MGI Sequence Detail	175	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5464:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126318	Chr14:67106733-67106738 (+)	437 bp