Gm6149 Pseudogene Detail

Summary

• Symbol
  Gm6149
• Name
  predicted gene 6149

• Feature Type
  pseudogene
• IDs
  MGI:3643044
  NCBI Gene: 620408
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:58886025-58886962 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 30.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643044	pseudogene	Chr17:58886023-58886962 (-)
129S1/SvImJ	ENSMUSG00200017018	pseudogene	Chr17:54149263-54150204 (-)
A/J	ENSMUSG00195007236	pseudogene	Chr17:55558608-55559545 (-)
AKR/J	ENSMUSG00220013710	pseudogene	Chr17:54601845-54602782 (-)
BALB/cJ	ENSMUSG00180006452	pseudogene	Chr17:55304949-55305886 (-)
C3H/HeJ	ENSMUSG00175007587	pseudogene	Chr17:54623956-54624893 (-)
C57BL/6NJ	ENSMUSG00215010043	pseudogene	Chr17:54237425-54238362 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019801	pseudogene	Chr17:55274206-55275143 (-)
CBA/J	ENSMUSG00210029370	pseudogene	Chr17:54402838-54403775 (-)
DBA/2J	ENSMUSG00185009432	pseudogene	Chr17:57260679-57261616 (-)
FVB/NJ	ENSMUSG00205007649	pseudogene	Chr17:54917263-54918200 (-)
JF1/MsJ	ENSUMUG00000036162	pseudogene	Chr17:56941850-56942787 (-)
LP/J	ENSMUSG00230029554	pseudogene	Chr17:58211071-58212012 (-)
NOD/ShiLtJ	ENSMUSG00190011682	pseudogene	Chr17:54373719-54374660 (-)
NZO/HlLtJ	ENSMUSG00225043515	pseudogene	Chr17:60523553-60524490 (-)
PWK/PhJ	ENSLUMG00010009862	pseudogene	Chr17:54204102-54205039 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024522	pseudogene	Chr17:55241654-55242590 (-)

Homology

• Gene Tree
  Gm6149
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117271 (Evidence)
• NCBI Gene
  620408

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117271	Ensembl Gene Model | MGI Sequence Detail	938	C57BL/6J
transcript	ENSMUST00000232830	Ensembl | MGI Sequence Detail	938	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;