Rps15a-ps1 Pseudogene Detail

Summary

• Symbol
  Rps15a-ps1
• Name
  ribosomal protein S15A, pseudogene 1
• Synonyms
  Gm7263

• Feature Type
  pseudogene
• IDs
  MGI:3643034
  NCBI Gene: 639162
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:106028239-106028631 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 55.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643034	pseudogene	Chr10:106028203-106028648 (-)
129S1/SvImJ	ENSMUSG00200011717	pseudogene	Chr10:102446300-102446692 (-)
A/J	ENSMUSG00195009073	pseudogene	Chr10:102861550-102861942 (-)
AKR/J	ENSMUSG00220025825	pseudogene	Chr10:102436238-102436630 (-)
BALB/cJ	ENSMUSG00180026230	pseudogene	Chr10:102868283-102868675 (-)
C3H/HeJ	ENSMUSG00175016304	pseudogene	Chr10:102792498-102792890 (-)
C57BL/6NJ	ENSMUSG00215013187	pseudogene	Chr10:102526666-102527058 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011645	pseudogene	Chr10:101983216-101983608 (-)
CBA/J	ENSMUSG00210011645	pseudogene	Chr10:102683373-102683765 (-)
DBA/2J	ENSMUSG00185025461	pseudogene	Chr10:102810572-102810964 (-)
FVB/NJ	ENSMUSG00205011151	pseudogene	Chr10:102320495-102320887 (-)
JF1/MsJ	ENSUMUG00000011783	pseudogene	Chr10:104224084-104224476 (-)
LP/J	ENSMUSG00230012970	pseudogene	Chr10:104771927-104772319 (-)
NOD/ShiLtJ	ENSMUSG00190021707	pseudogene	Chr10:102910622-102911014 (-)
NZO/HlLtJ	ENSMUSG00225041066	pseudogene	Chr10:109027440-109027832 (-)
PWK/PhJ	ENSLUMG00010014452	pseudogene	Chr10:102484064-102484456 (-)
SPRET/EiJ	ENSMSPG00010005863	pseudogene	Chr10:104353367-104353759 (-)
WSB/EiJ	ENSIUOG00005010836	pseudogene	Chr10:102608310-102608702 (-)

Homology

• Gene Tree
  Rps15a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rps15a-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000056877 (Evidence)
• NCBI Gene
  639162

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056877	Ensembl Gene Model | MGI Sequence Detail	393	C57BL/6J
transcript	ENSMUST00000071120	Ensembl | MGI Sequence Detail	393	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rps15a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99181	Chr10:106028660-106028662 (-)	-30 bp