Ighv1-71 Gene Detail

Summary

• Symbol
  Ighv1-71
• Name
  immunoglobulin heavy variable 1-71

• Feature Type
  gene segment
• IDs
  MGI:3643033
  NCBI Gene: 619886
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:115705825-115706126 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643033	gene segment	Chr12:115705825-115706267 (-)
129S1/SvImJ	ENSMUSG00200031534	gene segment	Chr12:107296690-107297132 (-)
129S1/SvImJ	ENSMUSG00200029080	gene segment	Chr12:107736039-107736480 (-)
A/J	ENSMUSG00195051155	gene segment	Chr12:110452620-110453062 (-)
A/J	ENSMUSG00195049845	gene segment	Chr12:110097865-110098306 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180053300	gene segment	Chr12:109400656-109401098 (-)
BALB/cJ	ENSMUSG00180053028	gene segment	Chr12:110237220-110237661 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215048723	gene segment	Chr12:108573743-108574185 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044732	gene segment	Chr12:108499242-108499684 (-)
CAST/EiJ	ENSTCUG00005044899	gene segment	Chr12:108650861-108651303 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000027798	gene segment	Chr12:115676945-115677386 (-)
LP/J	ENSMUSG00230046041	gene segment	Chr12:117797628-117798070 (-)
NOD/ShiLtJ	ENSMUSG00190033988	gene segment	Chr12:107412058-107412500 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010050839	gene segment	Chr12:108625068-108625510 (-)
PWK/PhJ	ENSLUMG00010052243	gene segment	Chr12:108774002-108774444 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  IGHV1-18, immunoglobulin heavy variable 1-18

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  IGHV1-18, immunoglobulin heavy variable 1-18
  
• Synonyms
  IGHV118
• Links
  HGNC:5549

  NCBI Gene ID: 28468

  UniProt: A0A0C4DH31

  
  
• Chr Location
  14q32.33; chr14:106184899-106185394 (-)  GRCh38

---

• Human Ortholog
  IGHV1-24, immunoglobulin heavy variable 1-24
  
• Synonyms
  IGHV124, VH
• Links
  HGNC:5551

  NCBI Gene ID: 28467

  UniProt: A0A0C4DH33

  
  
• Chr Location
  14q32.33; chr14:106276546-106277043 (-)  GRCh38

---

• Human Ortholog
  IGHV1-58, immunoglobulin heavy variable 1-58
  
• Synonyms
  IGHV158, VH
• Links
  HGNC:5555

  NCBI Gene ID: 28464

  UniProt: A0A0C4DH39

  
  
• Chr Location
  14q32.33; chr14:106622357-106622855 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ighv1-71 stringent orthology
  3 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: IGHV1-18, IGHV1-24, IGHV1-58
• Gene Tree
  Ighv1-71
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096577 (Evidence)
• NCBI Gene
  619886

Representative Sequences			Length	Strain/Species
genomic	619886	NCBI Gene Model | MGI Sequence Detail	302	C57BL/6J
polypeptide	A0A0G2JFL3	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 7
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Ighv1-71:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118122	Chr12:115706294-115706323 (-)	-183 bp