Gm6109 Pseudogene Detail

Summary

• Symbol
  Gm6109
• Name
  predicted gene 6109

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643032
  NCBI Gene: 619883
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:93584996-93585343 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 47.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643032	pseudogene	Chr13:93584929-93585398 (+)
129S1/SvImJ	ENSMUSG00200009150	pseudogene	Chr13:88084594-88084941 (+)
A/J	ENSMUSG00195024567	pseudogene	Chr13:88579590-88579937 (+)
AKR/J	ENSMUSG00220014109	pseudogene	Chr13:87065302-87065649 (+)
BALB/cJ	ENSMUSG00180016089	pseudogene	Chr13:89120915-89121262 (+)
C3H/HeJ	ENSMUSG00175023747	pseudogene	Chr13:89284817-89285164 (+)
C57BL/6NJ	ENSMUSG00215003002	pseudogene	Chr13:89183228-89183575 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009828	pseudogene	Chr13:88380031-88380378 (+)
CBA/J	ENSMUSG00210024806	pseudogene	Chr13:88606512-88606859 (+)
DBA/2J	ENSMUSG00185019794	pseudogene	Chr13:92267252-92267599 (+)
FVB/NJ	ENSMUSG00205008888	pseudogene	Chr13:88076796-88077143 (+)
JF1/MsJ	ENSUMUG00000027727	pseudogene	Chr13:91954313-91954660 (+)
LP/J	ENSMUSG00230037857	pseudogene	Chr13:102285281-102285628 (+)
NOD/ShiLtJ	ENSMUSG00190018560	pseudogene	Chr13:88965653-88966000 (+)
NZO/HlLtJ	ENSMUSG00225034124	pseudogene	Chr13:94798949-94799296 (+)
PWK/PhJ	ENSLUMG00010011831	pseudogene	Chr13:88060802-88061149 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005031186	pseudogene	Chr13:87987869-87988216 (+)

Homology

• Gene Tree
  Gm6109
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm6109
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000113237 (Evidence)
• NCBI Gene
  619883

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113237	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000223297	Ensembl | MGI Sequence Detail	348	Not Applicable
polypeptide	XP_889797	RefSeq | MGI Sequence Detail	115	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69