Gm6407 Pseudogene Detail

Summary

• Symbol
  Gm6407
• Name
  predicted gene 6407

• Feature Type
  pseudogene
• IDs
  MGI:3642965
  NCBI Gene: 623191
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:73526089-73526637 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642965	pseudogene	Chr10:73525929-73526846 (-)
129S1/SvImJ	ENSMUSG00200017647	pseudogene	Chr10:70217529-70218077 (-)
A/J	ENSMUSG00195005836	pseudogene	Chr10:70538433-70538981 (-)
AKR/J	ENSMUSG00220029591	pseudogene	Chr10:70186381-70186929 (-)
BALB/cJ	ENSMUSG00180007759	pseudogene	Chr10:70553002-70553550 (-)
C3H/HeJ	ENSMUSG00175012747	pseudogene	Chr10:70403892-70404440 (-)
C57BL/6NJ	ENSMUSG00215004136	pseudogene	Chr10:70161879-70162427 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009434	pseudogene	Chr10:67593863-67594411 (-)
CAST/EiJ	ENSTCUG00005027901	pseudogene	Chr10:70065350-70065898 (-)
CBA/J	ENSMUSG00210009948	pseudogene	Chr10:70267643-70268191 (-)
DBA/2J	ENSMUSG00185020522	pseudogene	Chr10:70622926-70623474 (-)
FVB/NJ	ENSMUSG00205007848	pseudogene	Chr10:70328254-70328802 (-)
JF1/MsJ	ENSUMUG00000055635	pseudogene	Chr10:71782907-71783455 (-)
LP/J	ENSMUSG00230051394	pseudogene	Chr10:72392622-72393170 (-)
NOD/ShiLtJ	ENSMUSG00190007970	pseudogene	Chr10:70593615-70594163 (-)
NZO/HlLtJ	ENSMUSG00225048670	pseudogene	Chr10:76689041-76689589 (-)
PWK/PhJ	ENSLUMG00010007833	pseudogene	Chr10:70188331-70188873 (-)
SPRET/EiJ	ENSMSPG00010047651	pseudogene	Chr10:71950780-71951319 (-)
WSB/EiJ	ENSIUOG00005034007	pseudogene	Chr10:70160096-70160644 (-)

Homology

• Gene Tree
  Gm6407
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6407
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093548 (Evidence)
• NCBI Gene
  623191

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093548	Ensembl Gene Model | MGI Sequence Detail	549	C57BL/6J
transcript	ENSMUST00000176468	Ensembl | MGI Sequence Detail	549	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm6407:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98093	Chr10:73526840-73526843 (-)	-205 bp