Gm5643 Pseudogene Detail

Summary

• Symbol
  Gm5643
• Name
  predicted gene 5643

• Feature Type
  pseudogene
• IDs
  MGI:3642955
  NCBI Gene: 434858
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:141080561-141081526 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 63.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642955	pseudogene	ChrX:141080501-141082233 (+)
129S1/SvImJ	ENSMUSG00200047518	pseudogene	ChrX:120093366-120094331 (+)
A/J	ENSMUSG00195048509	pseudogene	ChrX:123955614-123956579 (+)
AKR/J	ENSMUSG00220039229	pseudogene	ChrX:117385700-117386665 (+)
BALB/cJ	ENSMUSG00180040735	pseudogene	ChrX:120385727-120386692 (+)
C3H/HeJ	ENSMUSG00175035551	pseudogene	ChrX:124245954-124246919 (+)
C57BL/6NJ	ENSMUSG00215045239	pseudogene	ChrX:120848290-120849255 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041663	pseudogene	ChrX:121478022-121478987 (+)
CBA/J	ENSMUSG00210033412	pseudogene	ChrX:121174851-121175816 (+)
DBA/2J	ENSMUSG00185033954	pseudogene	ChrX:135065758-135066723 (+)
FVB/NJ	ENSMUSG00205038743	pseudogene	ChrX:119569561-119570526 (+)
JF1/MsJ	ENSUMUG00000032274	pseudogene	ChrX:154343014-154343979 (+)
JF1/MsJ	ENSUMUG00000000467	pseudogene	Chr4:155336302-155337256 (+)
LP/J	ENSMUSG00230040124	pseudogene	ChrX:141694078-141695043 (+)
NOD/ShiLtJ	ENSMUSG00190044149	pseudogene	ChrX:120571182-120572147 (+)
NZO/HlLtJ	ENSMUSG00225042906	pseudogene	ChrX:146385478-146386443 (+)
PWK/PhJ	ENSLUMG00010034766	pseudogene	Chr13:17635981-17636922 (-)
PWK/PhJ	ENSLUMG00010045633	pseudogene	ChrX:119050560-119051525 (+)
PWK/PhJ	ENSLUMG00010028982	pseudogene	Chr4:147578310-147579264 (+)
SPRET/EiJ	ENSMSPG00010041461	pseudogene	ChrX:123763598-123764562 (+)
WSB/EiJ	ENSIUOG00005038865	pseudogene	ChrX:121221062-121222027 (+)

Homology

• Gene Tree
  Gm5643
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000083311 (Evidence)
• NCBI Gene
  434858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083311	Ensembl Gene Model | MGI Sequence Detail	966	C57BL/6J
transcript	ENSMUST00000117081	Ensembl | MGI Sequence Detail	966	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5643:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5695	ChrX:141080498-141080500 (+)	-62 bp