Gm8959 Pseudogene Detail

Summary

• Symbol
  Gm8959
• Name
  predicted gene 8959

• Feature Type
  pseudogene
• IDs
  MGI:3642930
  NCBI Gene: 668070
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:51568191-51568761 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 28.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642930	pseudogene	Chr9:51568163-51568848 (+)
129S1/SvImJ	ENSMUSG00200018915	pseudogene	Chr9:48724519-48725089 (+)
A/J	ENSMUSG00195024574	pseudogene	Chr9:48414607-48415177 (+)
AKR/J	ENSMUSG00220042427	pseudogene	Chr9:48511436-48512006 (+)
BALB/cJ	ENSMUSG00180032820	pseudogene	Chr9:48525945-48526515 (+)
C3H/HeJ	ENSMUSG00175015935	pseudogene	Chr9:48537940-48538510 (+)
C57BL/6NJ	ENSMUSG00215037877	pseudogene	Chr9:48495830-48496400 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016197	pseudogene	Chr9:48461241-48461811 (+)
CBA/J	ENSMUSG00210017000	pseudogene	Chr9:48621827-48622397 (+)
DBA/2J	ENSMUSG00185012362	pseudogene	Chr9:48652390-48652960 (+)
FVB/NJ	ENSMUSG00205044692	pseudogene	Chr9:48872500-48873070 (+)
JF1/MsJ	ENSUMUG00000043518	pseudogene	Chr9:48699800-48700374 (+)
LP/J	ENSMUSG00230042575	pseudogene	Chr9:48940360-48940930 (+)
NOD/ShiLtJ	ENSMUSG00190025895	pseudogene	Chr9:48732404-48732974 (+)
NZO/HlLtJ	ENSMUSG00225044452	pseudogene	Chr9:48908792-48909362 (+)
PWK/PhJ	ENSLUMG00010022530	pseudogene	Chr9:48668123-48668697 (+)
SPRET/EiJ	ENSMSPG00010011862	pseudogene	Chr9:49506759-49507333 (+)
WSB/EiJ	ENSIUOG00005021115	pseudogene	Chr9:48140266-48140836 (+)

Homology

• Gene Tree
  Gm8959
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110825 (Evidence)
• NCBI Gene
  668070

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110825	Ensembl Gene Model | MGI Sequence Detail	571	C57BL/6J
transcript	ENSMUST00000213150	Ensembl | MGI Sequence Detail	571	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8959:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85090	Chr9:51568162-51568163 (+)	-28 bp