Ssxb16 Gene Detail

Summary

• Symbol
  Ssxb16
• Name
  SSX member B16
• Synonyms
  Gm5751

• Feature Type
  protein coding gene
• IDs
  MGI:3642927
  NCBI Gene: 436188
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:8736751-8747570 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 4.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  454 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642927	protein coding gene	ChrX:8736751-8747570 (+)
129S1/SvImJ	ENSMUSG00200033756	protein coding gene	ChrX:3426344-3432842 (+)
A/J	ENSMUSG00195036819	protein coding gene	ChrX:3458792-3465289 (+)
AKR/J	ENSMUSG00220030229	protein coding gene	ChrX:3103285-3109783 (+)
BALB/cJ	ENSMUSG00180029048	protein coding gene	ChrX:3456578-3463075 (+)
C3H/HeJ	ENSMUSG00175033587	protein coding gene	ChrX:3470478-3476975 (+)
C57BL/6NJ	ENSMUSG00215040399	protein coding gene	ChrX:4129547-4136044 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030175	protein coding gene	ChrX:3450016-3456503 (+)
CBA/J	ENSMUSG00210032408	protein coding gene	ChrX:3520466-3526964 (+)
DBA/2J	ENSMUSG00185035665	protein coding gene	ChrX:10111551-10118048 (+)
FVB/NJ	ENSMUSG00205025871	protein coding gene	ChrX:3292958-3299455 (+)
JF1/MsJ	ENSUMUG00000036898	protein coding gene	ChrX:23981870-23988356 (+)
LP/J	ENSMUSG00230031334	protein coding gene	ChrX:14632755-14639253 (+)
NOD/ShiLtJ	ENSMUSG00190037568	protein coding gene	ChrX:3462455-3468952 (+)
NZO/HlLtJ	ENSMUSG00225044953	protein coding gene	ChrX:19897431-19903928 (+)
PWK/PhJ	ENSLUMG00010032665	protein coding gene	ChrX:3441876-3448362 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005016640	protein coding gene	ChrX:112031-118529 (+)

Homology

• Human Ortholog
  SSX1, SSX family member 1

• Vertebrate Orthologs
  12

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SSX1, SSX family member 1
  
• Synonyms
  CT5.1, SPGFX5, SSRC
• Links
  HGNC:11335

  NCBI Gene ID: 6756

  UniProt: Q16384

  
  
• Chr Location
  Xp11.23; chrX:48255392-48267444 (+)  GRCh38

---

• Human Ortholog
  SSX2, SSX family member 2
  
• Synonyms
  CT5.2, CT5.2A, HD21, HOM-MEL-40, SSX
• Links
  HGNC:11336

  NCBI Gene ID: 6757

  UniProt: Q16385

  
  
• Chr Location
  Xp11.22; chrX:52696896-52707227 (-)  GRCh38

---

• Human Ortholog
  SSX2B, SSX family member 2B
  
• Synonyms
  CT5.2, CT5.2b, HOM-MEL-40, SSX
• Links
  HGNC:22263

  NCBI Gene ID: 727837

  UniProt: Q16385

  
  
• Chr Location
  Xp11.22; chrX:52751132-52790305 (+)  GRCh38

---

• Human Ortholog
  SSX3, SSX family member 3
  
• Synonyms
  CT5.3
• Links
  HGNC:11337

  NCBI Gene ID: 10214

  UniProt: Q99909

  
  
• Chr Location
  Xp11.23; chrX:48346427-48356707 (-)  GRCh38

---

• Human Ortholog
  SSX4, SSX family member 4
  
• Synonyms
  CT5.4
• Links
  HGNC:11338

  NCBI Gene ID: 6759

  UniProt: O60224

  
  
• Chr Location
  Xp11.23

---

• Human Ortholog
  SSX4B, SSX family member 4B
  
• Synonyms
  CT5.4
• Links
  HGNC:16880

  NCBI Gene ID: 548313

  UniProt: O60224

  
  
• Chr Location
  Xp11.23

---

• Human Ortholog
  SSX5, SSX family member 5
  
• Links
  HGNC:11339

  NCBI Gene ID: 6758

  UniProt: O60225

  
  
• Chr Location
  Xp11.23; chrX:48186220-48196795 (-)  GRCh38

---

• Human Ortholog
  SSX6P, SSX family member 6, pseudogene
  
• Synonyms
  dJ54B20.1, psiSSX2, SSX6, SSXP2
• Links
  HGNC:19652

  NCBI Gene ID: 280657

  UniProt: Q7RTT6

  
  
• Chr Location
  Xp11.23; chrX:48107982-48120686 (+)  GRCh38

---

• Human Ortholog
  SSX7, SSX family member 7
  
• Links
  HGNC:19653

  NCBI Gene ID: 280658

  UniProt: Q7RTT5

  
  
• Chr Location
  Xp11.22; chrX:52644061-52654900 (-)  GRCh38

---

• Human Ortholog
  SSX8P, SSX family member 8, pseudogene
  
• Synonyms
  SSX8
• Links
  HGNC:19654

  NCBI Gene ID: 280659

  UniProt: Q7RTT4

  
  
• Chr Location
  Xp11.22; chrX:52622935-52633948 (+)  GRCh38

---

• Human Ortholog
  SSX9P, SSX family member 9, pseudogene
  
• Synonyms
  SSX9
• Links
  HGNC:19655

  NCBI Gene ID: 280660

  UniProt: Q7RTT3

  
  
• Chr Location
  Xp11.23; chrX:48296816-48306179 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ssxb16 stringent orthology
  11 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: SSX1, SSX2, SSX2B, SSX3, SSX4, SSX4B, SSX5, SSX6P, SSX7, SSX8P, SSX9P
• Gene Tree
  Ssxb16
  

Human Diseases

• Diseases
  2 with human SSX1 associations

				Human Disease	Mouse Models
				synovial sarcoma IDs synovial sarcoma       DOID:5485 MESH:D013584 NCI:C3400 OMIM:300813 UMLS_CUI:C0039101
				X-linked spermatogenic failure 5 IDs X-linked spermatogenic failure 5       DOID:0070596 OMIM:301099

Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  5
• GO References
  3

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000079697 (Evidence)
• NCBI Gene
  436188

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079697	Ensembl Gene Model | MGI Sequence Detail	10820	C57BL/6J
transcript	ENSMUST00000115561	Ensembl | MGI Sequence Detail	1165	Not Applicable
polypeptide	ENSMUSP00000111223	Ensembl | MGI Sequence Detail	150	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR003655 Ancestral KRAB domain
  IPR001909 Krueppel-associated box
  IPR036051 Krueppel-associated box domain superfamily
  IPR019041 SSXRD motif

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:7484064

References

• Summaries
  All 10

  Gene Ontology 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;