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Lce3d Gene Detail
Summary
  • Symbol
    Lce3d
  • Name
    late cornified envelope 3D
  • Synonyms
    Gm9782
  • Feature Type
    protein coding gene
  • IDs
    MGI:3642919
    NCBI Gene: 630994
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:92864697-92865812 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642919
 protein coding gene Chr3:92864695-92865881 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027525
 protein coding gene Chr3:93436209-93437324 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0027457
 protein coding gene Chr3:92619371-92620486 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0027238
 protein coding gene Chr3:92816268-92817439 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0025290
 protein coding gene Chr3:87105070-87106179 (+)
CAST/EiJ MGP_CASTEiJ_G0026685
 protein coding gene Chr3:92253344-92253803 (+)
CBA/J MGP_CBAJ_G0027214
 protein coding gene Chr3:100332924-100334039 (+)
DBA/2J MGP_DBA2J_G0027350
 protein coding gene Chr3:89802045-89802832 (+)
FVB/NJ MGP_FVBNJ_G0027319
 protein coding gene Chr3:87972867-87973982 (+)
LP/J MGP_LPJ_G0027459
 protein coding gene Chr3:94658278-94659449 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027344
 protein coding gene Chr3:106610829-106611268 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028001
 protein coding gene Chr3:92350442-92351534 (+)
PWK/PhJ MGP_PWKPhJ_G0026415
 protein coding gene Chr3:89730635-89732179 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0026768
 protein coding gene Chr3:92714000-92724605 (+)



Homology
more
  • Human Ortholog
    LCE3B, late cornified envelope 3B
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LCE3B, late cornified envelope 3B
  • Synonyms
    LEP14
  • Links
    NCBI Gene ID: 353143
    neXtProt AC: NX_Q5TA77
    UniProt: Q5TA77

  • Chr Location
    1q21.3; chr1:152613811-152614098 (+)  GRCh38
  • Human Ortholog
    LCE3C, late cornified envelope 3C
  • Synonyms
    LEP15, SPRL3A
  • Links
    NCBI Gene ID: 353144
    neXtProt AC: NX_Q5T5A8
    UniProt: Q5T5A8

  • Chr Location
    1q21.3; chr1:152600234-152601086 (+)  GRCh38
  • Human Ortholog
    LCE3D, late cornified envelope 3D
  • Synonyms
    LEP16, SPRL6A, SPRL6B
  • Links
    NCBI Gene ID: 84648
    neXtProt AC: NX_Q9BYE3
    UniProt: Q9BYE3

  • Chr Location
    1q21.3; chr1:152579381-152580516 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Lce3d
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000043472 Ensembl Gene Model | MGI Sequence Detail 1116 C57BL/6J ±  kb
transcript ENSMUST00000059053 Ensembl | MGI Sequence Detail 491 Not Applicable  
polypeptide ENSMUSP00000130993 Ensembl | MGI Sequence Detail 98 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR028205 Late cornified envelope protein
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 5
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory