Gm9828 Gene Detail

Summary

• Symbol
  Gm9828
• Name
  predicted gene 9828

• Feature Type
  lncRNA gene
• IDs
  MGI:3642913
  NCBI Gene: 105246056
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:98453624-98460923 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 51.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  286 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642913	lncRNA gene	Chr13:98452930-98463737 (+)
129S1/SvImJ	ENSMUSG00200008908	lncRNA gene	Chr13:93014934-93025748 (+)
A/J	ENSMUSG00195029418	lncRNA gene	Chr13:93508601-93516675 (+)
AKR/J	ENSMUSG00220029704	lncRNA gene	Chr13:91995574-92003674 (+)
BALB/cJ	ENSMUSG00180038862	lncRNA gene	Chr13:94044560-94055373 (+)
C3H/HeJ	ENSMUSG00175017469	lncRNA gene	Chr13:94211500-94222313 (+)
C57BL/6NJ	ENSMUSG00215030194	lncRNA gene	Chr13:94102804-94113611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002842	antisense lncRNA gene	Chr13:91958124-91966085 (+)
CAST/EiJ	ENSTCUG00005011666	lncRNA gene	Chr13:93319896-93327433 (+)
CBA/J	ENSMUSG00210012017	lncRNA gene	Chr13:93536047-93544144 (+)
DBA/2J	ENSMUSG00185020416	lncRNA gene	Chr13:97196788-97204887 (+)
FVB/NJ	ENSMUSG00205036667	lncRNA gene	Chr13:92998719-93009535 (+)
JF1/MsJ	ENSUMUG00000033526	lncRNA gene	Chr13:96880528-96888582 (+)
LP/J	ENSMUSG00230037353	lncRNA gene	Chr13:107199497-107210309 (+)
NOD/ShiLtJ	ENSMUSG00190041783	lncRNA gene	Chr13:93869065-93879877 (+)
NZO/HlLtJ	ENSMUSG00225033587	lncRNA gene	Chr13:99724652-99735464 (+)
PWK/PhJ	ENSLUMG00010026170	lncRNA gene	Chr13:92977050-92985107 (+)
SPRET/EiJ	ENSMSPG00010009371	lncRNA gene	Chr13:94244455-94252226 (+)
WSB/EiJ	ENSIUOG00005035831	lncRNA gene	Chr13:92884079-92892198 (+)

Homology

• Gene Tree
  Gm9828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000048603 (Evidence)
• NCBI Gene
  105246056

Representative Sequences			Length	Strain/Species
genomic	105246056	NCBI Gene Model | MGI Sequence Detail	7300	C57BL/6J
transcript	NR_137279	RefSeq | MGI Sequence Detail	918	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm9828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120798	Chr13:98452870-98452876 (+)	-751 bp
Tssr120799	Chr13:98452892-98452914 (+)	-721 bp
Tssr120800	Chr13:98452923-98452929 (+)	-698 bp
Tssr120801	Chr13:98452941-98452949 (+)	-679 bp
Tssr120802	Chr13:98453577-98453597 (+)	-37 bp