Gm10544 MGI Mouse Gene Detail - MGI:3642892

Symbol

Gm10544
Name

predicted gene 10544

Feature Type

lncRNA gene
IDs

MGI:3642892
NCBI Gene: 100038509
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr18:37292907-37311788 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 19.46 cM
Mapping Data

1 experiment

SNPs within 2kb

550 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642892	lncRNA gene	Chr18:37292907-37311788 (-)
129S1/SvImJ	ENSMUSG00200045184	lncRNA gene	Chr18:34292249-34311126 (-)
129S1/SvImJ	ENSMUSG00200043856	protein coding gene	Chr18:34292237-34310956 (-)
A/J	ENSMUSG00195034348	protein coding gene	Chr18:34445218-34463919 (-)
A/J	ENSMUSG00195038615	lncRNA gene	Chr18:34445230-34464089 (-)
AKR/J	ENSMUSG00220017204	lncRNA gene	Chr18:34435377-34454248 (-)
AKR/J	ENSMUSG00220016081	protein coding gene	Chr18:34435365-34454078 (-)
BALB/cJ	ENSMUSG00180017329	protein coding gene	Chr18:34894840-34913539 (-)
BALB/cJ	ENSMUSG00180021538	lncRNA gene	Chr18:34894852-34913709 (-)
C3H/HeJ	ENSMUSG00175034226	protein coding gene	Chr18:34416861-34435581 (-)
C3H/HeJ	ENSMUSG00175040531	lncRNA gene	Chr18:34416873-34435751 (-)
C57BL/6NJ	ENSMUSG00215027666	lncRNA gene	Chr18:34162406-34181270 (-)
C57BL/6NJ	ENSMUSG00215018505	protein coding gene	Chr18:34162394-34181100 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013493	unclassified non-coding RNA gene	Chr18:34408177-34426988 (-)
CAST/EiJ	ENSTCUG00005024056	lncRNA gene	Chr18:34046122-34064951 (-)
CBA/J	ENSMUSG00210020696	protein coding gene	Chr18:34436861-34455562 (-)
CBA/J	ENSMUSG00210021630	lncRNA gene	Chr18:34436873-34455732 (-)
DBA/2J	ENSMUSG00185020230	protein coding gene	Chr18:34371489-34390188 (-)
DBA/2J	ENSMUSG00185021634	lncRNA gene	Chr18:34371501-34390358 (-)
FVB/NJ	ENSMUSG00205036660	lncRNA gene	Chr18:34097179-34116052 (-)
FVB/NJ	ENSMUSG00205023130	protein coding gene	Chr18:34097167-34115882 (-)
JF1/MsJ	ENSUMUG00000049372	lncRNA gene	Chr18:34511580-34530033 (-)
LP/J	ENSMUSG00230048715	lncRNA gene	Chr18:36488936-36507807 (-)
LP/J	ENSMUSG00230048493	protein coding gene	Chr18:36488924-36507637 (-)
NOD/ShiLtJ	ENSMUSG00190017094	protein coding gene	Chr18:34165174-34183892 (-)
NOD/ShiLtJ	ENSMUSG00190022361	lncRNA gene	Chr18:34165186-34184062 (-)
NZO/HlLtJ	ENSMUSG00225047436	lncRNA gene	Chr18:36386959-36405843 (-)
NZO/HlLtJ	ENSMUSG00225045465	protein coding gene	Chr18:36386947-36405673 (-)
PWK/PhJ	ENSLUMG00010013617	lncRNA gene	Chr18:34669264-34691708 (-)
SPRET/EiJ	ENSMSPG00010024247	lncRNA gene	Chr18:34734000-34752849 (-)
WSB/EiJ	ENSIUOG00005008703	lncRNA gene	Chr18:34149049-34169374 (-)

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Gene Tree

Gm10544

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

2
Endonuclease-mediated

1
Targeted

1
Genomic Mutations

2 involving Gm10544
Find Mice (IMSR)

0 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

6
Literature Summary

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

43
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000097430 (Evidence)
NCBI Gene

100038509

			Length	Strain/Species	Flank
genomic	ENSMUSG00000097430	Ensembl Gene Model \| MGI Sequence Detail	18882	C57BL/6J	± kb
transcript	ENSMUST00000180516	Ensembl \| MGI Sequence Detail	2239	Not Applicable
polypeptide	Q8C967	UniProt \| EBI \| MGI Sequence Detail	130	Not Applicable

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UniProt

1 Sequence

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All nucleic 6

cDNA 6

Microarray probesets 2

Summaries

All 11

Developmental Gene Expression 1

Phenotypes 2
Earliest

J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
Latest

J:331893 Yang J, et al., Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Front Genet. 2022;13:974357

TSS for Gm10544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152981	Chr18:37311753-37311769 (-)	27 bp
Tssr152980	Chr18:37311546-37311584 (-)	223 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29