Gm9979 Gene Detail

Summary

• Symbol
  Gm9979
• Name
  predicted gene 9979

• Feature Type
  lncRNA gene
• IDs
  MGI:3642885
  NCBI Gene: 791406
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:40857440-40861425 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642885	lncRNA gene	Chr13:40857440-40861425 (+)
129S1/SvImJ	ENSMUSG00200013640	lncRNA gene	Chr13:38126681-38130632 (+)
A/J	ENSMUSG00195036663	lncRNA gene	Chr13:37187538-37191497 (+)
AKR/J	ENSMUSG00220033765	lncRNA gene	Chr13:36973659-36977617 (+)
BALB/cJ	ENSMUSG00180008895	lncRNA gene	Chr13:37492986-37496946 (+)
C3H/HeJ	ENSMUSG00175014164	lncRNA gene	Chr13:37457894-37461852 (+)
C57BL/6NJ	ENSMUSG00215013359	lncRNA gene	Chr13:37597770-37601716 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018448	protein coding gene	Chr13:36008515-36012850 (+)
CAST/EiJ	ENSTCUG00005038100	lncRNA gene	Chr13:37515623-37519592 (+)
CBA/J	ENSMUSG00210012230	lncRNA gene	Chr13:37463554-37467512 (+)
DBA/2J	ENSMUSG00185034278	lncRNA gene	Chr13:38257897-38261846 (+)
FVB/NJ	ENSMUSG00205036475	lncRNA gene	Chr13:37209950-37213910 (+)
JF1/MsJ	ENSUMUG00000041554	lncRNA gene	Chr13:37811888-37815859 (+)
LP/J	ENSMUSG00230017419	lncRNA gene	Chr13:47595836-47599795 (+)
NOD/ShiLtJ	ENSMUSG00190012233	lncRNA gene	Chr13:37660404-37664362 (+)
NZO/HlLtJ	ENSMUSG00225036761	lncRNA gene	Chr13:41370908-41374870 (+)
PWK/PhJ	ENSLUMG00010032742	lncRNA gene	Chr13:36648080-36652013 (+)
SPRET/EiJ	ENSMSPG00010011623	lncRNA gene	Chr13:36695084-36699139 (+)
WSB/EiJ	ENSIUOG00005029318	lncRNA gene	Chr13:36804996-36808960 (+)

Homology

• Gene Tree
  Gm9979
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9979
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055732 (Evidence)
• NCBI Gene
  791406

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055732	Ensembl Gene Model | MGI Sequence Detail	3986	C57BL/6J
transcript	ENSMUST00000069457	Ensembl | MGI Sequence Detail	3046	Not Applicable
polypeptide	Q8C8W8	UniProt | EBI | MGI Sequence Detail	108	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69