Rpl17-ps10 Pseudogene Detail

Summary

• Symbol
  Rpl17-ps10
• Name
  ribosomal protein L17, pseudogene 10
• Synonyms
  Gm10294

• Feature Type
  pseudogene
• IDs
  MGI:3642871
  NCBI Gene: 100042880
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:72298505-72299059 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 41.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642871	pseudogene	Chr7:72298482-72299098 (-)
129S1/SvImJ	ENSMUSG00200013152	pseudogene	Chr7:59051445-59051999 (-)
A/J	ENSMUSG00195015399	pseudogene	Chr7:63450841-63451395 (-)
AKR/J	ENSMUSG00220021102	pseudogene	Chr7:56992827-56993381 (-)
BALB/cJ	ENSMUSG00180004947	pseudogene	Chr7:60160571-60161125 (-)
C3H/HeJ	ENSMUSG00175022141	pseudogene	Chr7:60952643-60953197 (-)
C57BL/6NJ	ENSMUSG00215021796	pseudogene	Chr7:60077417-60077967 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004527	pseudogene	Chr7:63610637-63611191 (-)
CBA/J	ENSMUSG00210024138	pseudogene	Chr7:60812699-60813253 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205029002	pseudogene	Chr7:60783712-60784266 (-)
JF1/MsJ	ENSUMUG00000025365	pseudogene	Chr13:89425462-89426016 (+)
JF1/MsJ	ENSUMUG00000039224	pseudogene	Chr15:4899235-4899789 (+)
JF1/MsJ	ENSUMUG00000010943	pseudogene	Chr7:69886591-69887145 (-)
JF1/MsJ	ENSUMUG00000004281	pseudogene	Chr3:118808630-118809184 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190021062	pseudogene	Chr7:60912307-60912861 (-)
NZO/HlLtJ	ENSMUSG00225018224	pseudogene	Chr7:69493117-69493671 (-)
PWK/PhJ	ENSLUMG00010019443	pseudogene	Chr7:59433229-59433783 (-)
PWK/PhJ	ENSLUMG00010037887	pseudogene	Chr15:4925921-4926475 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl17-ps10
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Rpl17-ps10
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081895 (Evidence)
• NCBI Gene
  100042880

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081895	Ensembl Gene Model | MGI Sequence Detail	555	C57BL/6J
transcript	ENSMUST00000119383	Ensembl | MGI Sequence Detail	555	Not Applicable

References

• Summaries
  All 15

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Rpl17-ps10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72931	Chr7:72299097-72299107 (-)	-43 bp