Gm10658 MGI Mouse Gene Detail - MGI:3642856

Symbol

Gm10658
Name

predicted gene 10658

Feature Type

lncRNA gene
IDs

MGI:3642856
NCBI Gene: 100038566
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr9:56964181-56979250 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 30.88 cM
Mapping Data

1 experiment

SNPs within 2kb

300 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642856	lncRNA gene	Chr9:56962468-56979254 (-)
129S1/SvImJ	ENSMUSG00200035618	protein coding gene	Chr9:54072911-54098503 (-)
129S1/SvImJ	ENSMUSG00200036013	lncRNA gene	Chr9:54076757-54093572 (-)
A/J	ENSMUSG00195043040	lncRNA gene	Chr9:53775541-53792350 (-)
A/J	ENSMUSG00195035588	protein coding gene	Chr9:53771695-53797281 (-)
AKR/J	ENSMUSG00220033352	lncRNA gene	Chr9:53912787-53929600 (-)
AKR/J	ENSMUSG00220024502	protein coding gene	Chr9:53908941-53934531 (-)
BALB/cJ	ENSMUSG00180018392	protein coding gene	Chr9:53897710-53923272 (-)
BALB/cJ	ENSMUSG00180019147	lncRNA gene	Chr9:53901556-53918341 (-)
C3H/HeJ	ENSMUSG00175020884	protein coding gene	Chr9:53898503-53924079 (-)
C3H/HeJ	ENSMUSG00175022694	lncRNA gene	Chr9:53902350-53919160 (-)
C57BL/6NJ	ENSMUSG00215032798	lncRNA gene	Chr9:53894919-53911703 (-)
C57BL/6NJ	ENSMUSG00215012370	protein coding gene	Chr9:53891073-53916634 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013858	unclassified non-coding RNA gene	Chr9:53749500-53766129 (-)
CAST/EiJ	ENSTCUG00005021469	lncRNA gene	Chr9:53803391-53820374 (-)
CBA/J	ENSMUSG00210041710	lncRNA gene	Chr9:54004077-54020879 (-)
CBA/J	ENSMUSG00210032632	protein coding gene	Chr9:54000229-54025808 (-)
DBA/2J	ENSMUSG00185040047	protein coding gene	Chr9:54028844-54054437 (-)
DBA/2J	ENSMUSG00185043108	lncRNA gene	Chr9:54032690-54049506 (-)
FVB/NJ	ENSMUSG00205021134	protein coding gene	Chr9:54341633-54367224 (-)
FVB/NJ	ENSMUSG00205041756	lncRNA gene	Chr9:54345487-54362293 (-)
JF1/MsJ	ENSUMUG00000048260	lncRNA gene	Chr9:54055261-54072369 (-)
LP/J	ENSMUSG00230033881	protein coding gene	Chr9:54272701-54298294 (-)
LP/J	ENSMUSG00230039428	lncRNA gene	Chr9:54276547-54293363 (-)
NOD/ShiLtJ	ENSMUSG00190043931	lncRNA gene	Chr9:54100767-54117565 (-)
NOD/ShiLtJ	ENSMUSG00190034547	protein coding gene	Chr9:54096913-54122496 (-)
NZO/HlLtJ	ENSMUSG00225028712	lncRNA gene	Chr9:54313945-54330755 (-)
NZO/HlLtJ	ENSMUSG00225028157	protein coding gene	Chr9:54310099-54335686 (-)
PWK/PhJ	ENSLUMG00010040984	lncRNA gene	Chr9:54017638-54034702 (-)
SPRET/EiJ	ENSMSPG00010029770	lncRNA gene	Chr9:55046385-55063573 (-)
WSB/EiJ	ENSIUOG00005042426	lncRNA gene	Chr9:53514749-53531539 (-)

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Gene Tree

Gm10658

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

11
Gene trapped

11
Find Mice (IMSR)

1 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

48
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000074284 (Evidence)
NCBI Gene

100038566

			Length	Strain/Species	Flank
genomic	100038566	NCBI Gene Model \| MGI Sequence Detail	15070	C57BL/6J	± kb
transcript	NR_045886	RefSeq \| MGI Sequence Detail	1133	C57BL/6
polypeptide	Q3UNV3	UniProt \| EBI \| MGI Sequence Detail	47	Not Applicable

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UniProt

2 Sequences

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All nucleic 4

cDNA 4

Microarray probesets 2

Summaries

All 13

Phenotypes 2
Earliest

J:62678 Phillips RL, et al., The genetic program of hematopoietic stem cells. Science. 2000 Jun 2;288(5471):1635-40
Latest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm10658:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89753	Chr9:56979163-56979189 (-)	74 bp
Tssr89752	Chr9:56979134-56979146 (-)	110 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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