Gm9847 Pseudogene Detail

Summary

• Symbol
  Gm9847
• Name
  predicted pseudogene 9847

• Feature Type
  pseudogene
• IDs
  MGI:3642840
  NCBI Gene: 100043256
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:14544562-14545160 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 7.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642840	pseudogene	Chr12:14544471-14545289 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021946	protein coding gene	Chr15:74807021-74808947 (-)
A/J	MGP_AJ_G0019574	protein coding gene	Chr12:11431013-11432395 (+)
AKR/J	MGP_AKRJ_G0017606	protein coding gene	Chr10:96227802-96233868 (-)
BALB/cJ	MGP_BALBcJ_G0017611	protein coding gene	Chr10:93819995-93822553 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0018068	protein coding gene	Chr10:100180529-100182965 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015749	protein coding gene	Chr10:89114596-89117064 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0017403	protein coding gene	Chr10:104308754-104311060 (-)
DBA/2J	MGP_DBA2J_G0017509	protein coding gene	Chr10:92646745-92648991 (-)
FVB/NJ	MGP_FVBNJ_G0017501	protein coding gene	Chr10:91892259-91893475 (-)
LP/J	MGP_LPJ_G0017583	protein coding gene	Chr10:97592111-97595947 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019465	protein coding gene	Chr12:12744456-12745187 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0016780	protein coding gene	Chr10:92753117-92755470 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0016568	protein coding gene	Chr10:94968116-94970445 (-)
WSB/EiJ	MGP_WSBEiJ_G0021256	protein coding gene	Chr15:74390281-74394767 (-)

Homology

• Gene Tree
  Gm9847
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000050974 (Evidence)
• NCBI Gene
  100043256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050974	Ensembl Gene Model | MGI Sequence Detail	599	C57BL/6J
transcript	ENSMUST00000052528	Ensembl | MGI Sequence Detail	599	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;