Rpl9-ps7 Pseudogene Detail

Summary

• Symbol
  Rpl9-ps7
• Name
  ribosomal protein L9, pseudogene 7
• Synonyms
  Gm9822

• Feature Type
  pseudogene
• IDs
  MGI:3642824
  NCBI Gene: 100040021
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:70289326-70289904 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 41.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642824	pseudogene	Chr2:70289272-70290024 (+)
129S1/SvImJ	ENSMUSG00200036908	pseudogene	Chr2:67349887-67350465 (+)
A/J	ENSMUSG00195023448	pseudogene	Chr2:67499602-67500180 (+)
AKR/J	ENSMUSG00220040948	pseudogene	Chr2:67464428-67465006 (+)
BALB/cJ	ENSMUSG00180043398	pseudogene	Chr2:67447785-67448363 (+)
C3H/HeJ	ENSMUSG00175037822	pseudogene	Chr2:67567043-67567621 (+)
C57BL/6NJ	ENSMUSG00215033403	pseudogene	Chr2:67386282-67386860 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210040470	pseudogene	Chr2:67607327-67607905 (+)
DBA/2J	ENSMUSG00185041945	pseudogene	Chr2:67442912-67443490 (+)
FVB/NJ	ENSMUSG00205040602	pseudogene	Chr2:66910188-66910766 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230023175	pseudogene	Chr2:69248324-69248902 (+)
NOD/ShiLtJ	ENSMUSG00190041163	pseudogene	Chr2:67532880-67533458 (+)
NOD/ShiLtJ	ENSMUSG00190008271	pseudogene	Chr10:67512197-67512775 (-)
NZO/HlLtJ	ENSMUSG00225015449	pseudogene	Chr2:76990594-76991172 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005019827	pseudogene	Chr2:67584151-67584729 (+)

Homology

• Gene Tree
  Rpl9-ps7
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl9-ps7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000047965 (Evidence)
• NCBI Gene
  100040021

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000047965	Ensembl Gene Model | MGI Sequence Detail	579	C57BL/6J
transcript	ENSMUST00000140507	Ensembl | MGI Sequence Detail	579	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl9-ps7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18194	Chr2:70289289-70289300 (+)	-31 bp