Gm10419 Gene Detail

Summary

• Symbol
  Gm10419
• Name
  predicted gene 10419

• Feature Type
  lncRNA gene
• IDs
  MGI:3642823
  NCBI Gene: 100503802
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:108515803-108522349 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642823	lncRNA gene	Chr5:108515617-108526833 (+)
129S1/SvImJ	ENSMUSG00200021207	protein coding gene	Chr5:102267013-102270164 (+)
129S1/SvImJ	ENSMUSG00200024322	lncRNA gene	Chr5:102265261-102275706 (+)
A/J	ENSMUSG00195034161	protein coding gene	Chr5:101723832-101727011 (+)
A/J	ENSMUSG00195042050	lncRNA gene	Chr5:101722098-101732560 (+)
AKR/J	ENSMUSG00220043933	protein coding gene	Chr5:101273593-101276770 (+)
AKR/J	ENSMUSG00220051826	lncRNA gene	Chr5:101271859-101282336 (+)
BALB/cJ	ENSMUSG00180032456	protein coding gene	Chr5:101876662-101879841 (+)
BALB/cJ	ENSMUSG00180037193	lncRNA gene	Chr5:101874928-101885390 (+)
C3H/HeJ	ENSMUSG00175047889	lncRNA gene	Chr5:103916550-103927023 (+)
C3H/HeJ	ENSMUSG00175039832	protein coding gene	Chr5:103918284-103921461 (+)
C57BL/6NJ	ENSMUSG00215016464	protein coding gene	Chr5:101920323-101923502 (+)
C57BL/6NJ	ENSMUSG00215038575	lncRNA gene	Chr5:101918589-101929064 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006136	lincRNA gene	Chr5:101249303-101259806 (+)
CAST/EiJ	ENSTCUG00005031955	lncRNA gene	Chr5:101159357-101169822 (+)
CBA/J	ENSMUSG00210036310	protein coding gene	Chr5:102675855-102679032 (+)
CBA/J	ENSMUSG00210045352	lncRNA gene	Chr5:102674121-102684594 (+)
DBA/2J	ENSMUSG00185048684	lncRNA gene	Chr5:105578313-105588782 (+)
DBA/2J	ENSMUSG00185044007	protein coding gene	Chr5:105580047-105583226 (+)
FVB/NJ	ENSMUSG00205041203	lncRNA gene	Chr5:101600744-101611218 (+)
FVB/NJ	ENSMUSG00205023046	protein coding gene	Chr5:101602479-101605656 (+)
JF1/MsJ	ENSUMUG00000016468	lncRNA gene	Chr5:108639660-108650109 (+)
LP/J	ENSMUSG00230031093	protein coding gene	Chr5:109808069-109811220 (+)
LP/J	ENSMUSG00230032699	lncRNA gene	Chr5:109806319-109816762 (+)
NOD/ShiLtJ	ENSMUSG00190051538	lncRNA gene	Chr5:101574499-101584961 (+)
NOD/ShiLtJ	ENSMUSG00190042054	protein coding gene	Chr5:101576233-101579412 (+)
NZO/HlLtJ	ENSMUSG00225026517	lncRNA gene	Chr5:117428167-117438610 (+)
NZO/HlLtJ	ENSMUSG00225024899	protein coding gene	Chr5:117429917-117433068 (+)
PWK/PhJ	ENSLUMG00010016790	lncRNA gene	Chr5:100625734-100636192 (+)
SPRET/EiJ	ENSMSPG00010047566	lncRNA gene	Chr5:103730478-103740936 (+)
WSB/EiJ	ENSIUOG00005043886	lncRNA gene	Chr5:104303557-104314002 (+)

Homology

• Gene Tree
  Gm10419
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10419
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  603
• Tissues
  4
• cDNA Data
  5
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  210
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000072769 (Evidence)
• NCBI Gene
  100503802

Representative Sequences			Length	Strain/Species
genomic	100503802	NCBI Gene Model | MGI Sequence Detail	6547	C57BL/6J
transcript	NR_166481	RefSeq | MGI Sequence Detail	2968	C57BL/6
polypeptide	Q3URA8	UniProt | EBI | MGI Sequence Detail	132	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 6

  cDNA 5

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:331896 Huang J, et al., m(6)A-modified lincRNA Dubr is required for neuronal development by stabilizing YTHDF1/3 and facilitating mRNA translation. Cell Rep. 2022 Nov 22;41(8):111693

TSS for Gm10419:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47825	Chr5:108515598-108515640 (+)	-184 bp