9830004L10Rik Gene Detail

Summary

• Symbol
  9830004L10Rik
• Name
  RIKEN cDNA 9830004L10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642808
  NCBI Gene: 100038658
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:80162389-80207334 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1468 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642808	lncRNA gene	Chr1:80162389-80207334 (+)
129S1/SvImJ	ENSMUSG00200035462	lncRNA gene	Chr1:77836858-77844211 (+)
A/J	ENSMUSG00195010664	lncRNA gene	Chr1:77247410-77254761 (+)
AKR/J	ENSMUSG00220010780	lncRNA gene	Chr1:77417358-77424715 (+)
BALB/cJ	ENSMUSG00180020167	lncRNA gene	Chr1:77509946-77517299 (+)
C3H/HeJ	ENSMUSG00175018405	lncRNA gene	Chr1:77653924-77661278 (+)
C57BL/6NJ	ENSMUSG00215027307	lncRNA gene	Chr1:77558336-77565696 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029066	lncRNA gene	Chr1:77197786-77205132 (+)
CBA/J	ENSMUSG00210043063	lncRNA gene	Chr1:77426151-77433498 (+)
DBA/2J	ENSMUSG00185032620	lncRNA gene	Chr1:78472285-78479632 (+)
FVB/NJ	ENSMUSG00205038737	lncRNA gene	Chr1:76970260-76977553 (+)
JF1/MsJ	ENSUMUG00000005978	lncRNA gene	Chr1:77262482-77269844 (+)
LP/J	ENSMUSG00230014048	lncRNA gene	Chr1:78409923-78417274 (+)
NOD/ShiLtJ	ENSMUSG00190039566	lncRNA gene	Chr1:77629765-77637111 (+)
NZO/HlLtJ	ENSMUSG00225040829	lncRNA gene	Chr1:81637197-81644556 (+)
PWK/PhJ	ENSLUMG00010013877	lncRNA gene	Chr1:76873115-76880492 (+)
SPRET/EiJ	ENSMSPG00010019913	lncRNA gene	Chr1:79027485-79034012 (+)
WSB/EiJ	ENSIUOG00005013802	lncRNA gene	Chr1:77164284-77171622 (+)

Homology

• Gene Tree
  9830004L10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9830004L10Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• UniProt
  1

• Ensembl
  ENSMUSG00000099552 (Evidence)
• NCBI Gene
  100038658

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099552	Ensembl Gene Model | MGI Sequence Detail	44946	C57BL/6J
transcript	ENSMUST00000191452	Ensembl | MGI Sequence Detail	2718	Not Applicable
polypeptide	Q3UVB0	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45