BC028777 Gene Detail

Summary

• Symbol
  BC028777
• Name
  cDNA sequence BC028777
• Synonyms
  5430411J08Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3642753
  NCBI Gene: 100036538
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:24427835-24440704 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642753	lncRNA gene	Chr17:24427835-24440704 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015340	unclassified non-coding RNA gene	Chr17:23166930-23179798 (+)
A/J	MGP_AJ_G0015315	unclassified non-coding RNA gene	Chr17:22564255-22577145 (+)
AKR/J	MGP_AKRJ_G0015278	unclassified non-coding RNA gene	Chr17:22628619-22641484 (+)
BALB/cJ	MGP_BALBcJ_G0015278	unclassified non-coding RNA gene	Chr17:22739594-22752615 (+)
C3H/HeJ	MGP_C3HHeJ_G0015102	unclassified non-coding RNA gene	Chr17:22968463-22981427 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015732	unclassified non-coding RNA gene	Chr17:24207628-24221312 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013473	unclassified non-coding RNA gene	Chr17:20019397-20032396 (+)
CAST/EiJ	MGP_CASTEiJ_G0014653	unclassified non-coding RNA gene	Chr17:22803443-22816268 (+)
CBA/J	MGP_CBAJ_G0015081	unclassified non-coding RNA gene	Chr17:25036766-25049515 (+)
DBA/2J	MGP_DBA2J_G0015176	unclassified non-coding RNA gene	Chr17:22135266-22148090 (+)
FVB/NJ	MGP_FVBNJ_G0015183	unclassified non-coding RNA gene	Chr17:21854079-21867644 (+)
LP/J	MGP_LPJ_G0015256	unclassified non-coding RNA gene	Chr17:23481824-23494516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015209	unclassified non-coding RNA gene	Chr17:24756558-24769485 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015772	unclassified non-coding RNA gene	Chr17:22894432-22908741 (+)
PWK/PhJ	MGP_PWKPhJ_G0014443	unclassified non-coding RNA gene	Chr17:20894671-20908443 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014230	unclassified non-coding RNA gene	Chr17:20918236-20931680 (+)
WSB/EiJ	MGP_WSBEiJ_G0014760	unclassified non-coding RNA gene	Chr17:22962294-22975897 (+)

Homology

• Gene Tree
  BC028777
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  10
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000085185 (Evidence)
• NCBI Gene
  100036538

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085185	Ensembl Gene Model | MGI Sequence Detail	12870	C57BL/6J
transcript	ENSMUST00000137883	Ensembl | MGI Sequence Detail	912	Not Applicable
polypeptide	Q8CEP4	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9