Gm9947 Gene Detail

Summary

• Symbol
  Gm9947
• Name
  predicted gene 9947

• Feature Type
  lncRNA gene
• IDs
  MGI:3642739
  NCBI Gene: 105243866
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:14825676-14851198 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 4.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  963 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642739	lncRNA gene	Chr1:14823161-14866273 (+)
129S1/SvImJ	ENSMUSG00200018825	lncRNA gene	Chr1:12201112-12225070 (+)
A/J	ENSMUSG00195027984	lncRNA gene	Chr1:11989357-12013360 (+)
AKR/J	ENSMUSG00220008266	lncRNA gene	Chr1:12069695-12093697 (+)
BALB/cJ	ENSMUSG00180027608	lncRNA gene	Chr1:12055693-12079699 (+)
C3H/HeJ	ENSMUSG00175000416	lncRNA gene	Chr1:11988696-12012684 (+)
C57BL/6NJ	ENSMUSG00215015140	lncRNA gene	Chr1:12025847-12049845 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002298	antisense lncRNA gene	Chr1:10658165-10684353 (+)
CAST/EiJ	ENSTCUG00005022071	lncRNA gene	Chr1:12370473-12395672 (+)
CBA/J	ENSMUSG00210002977	lncRNA gene	Chr1:11854777-11878765 (+)
DBA/2J	ENSMUSG00185004085	lncRNA gene	Chr1:12918056-12942002 (+)
FVB/NJ	ENSMUSG00205018123	lncRNA gene	Chr1:12132706-12156708 (+)
JF1/MsJ	ENSUMUG00000018390	lncRNA gene	Chr1:12199045-12223648 (+)
LP/J	ENSMUSG00230019598	lncRNA gene	Chr1:12902492-12926450 (+)
NOD/ShiLtJ	ENSMUSG00190033235	lncRNA gene	Chr1:11962712-11986709 (+)
NZO/HlLtJ	ENSMUSG00225005467	lncRNA gene	Chr1:16289430-16313428 (+)
PWK/PhJ	ENSLUMG00010022246	lncRNA gene	Chr1:11816865-11841395 (+)
SPRET/EiJ	ENSMSPG00010028488	lncRNA gene	Chr1:12562486-12590591 (+)
WSB/EiJ	ENSIUOG00005011854	lncRNA gene	Chr1:11979596-12003560 (+)

Homology

• Gene Tree
  Gm9947
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000054493 (Evidence)
• NCBI Gene
  105243866

Representative Sequences			Length	Strain/Species
genomic	105243866	NCBI Gene Model | MGI Sequence Detail	25523	C57BL/6J
transcript	AK031377	GenBank | ENA | DDBJ | MGI Sequence Detail	4321	C57BL/6J
polypeptide	Q8BPS9	UniProt | EBI | MGI Sequence Detail	163	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;