Tmem51os1 Gene Detail

Summary

• Symbol
  Tmem51os1
• Name
  Tmem51 opposite strand 1
• Synonyms
  Gm10565, Tmem51as1

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3642733
  NCBI Gene: 100038693
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:141811609-141815412 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 75.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642733	antisense lncRNA gene	Chr4:141811182-141815521 (+)
129S1/SvImJ	ENSMUSG00200043390	protein coding gene	Chr4:135232588-135236238 (+)
129S1/SvImJ	ENSMUSG00200046787	lncRNA gene	Chr4:135232185-135236348 (+)
A/J	ENSMUSG00195037836	lncRNA gene	Chr4:136582412-136586543 (+)
A/J	ENSMUSG00195029806	protein coding gene	Chr4:136582812-136586460 (+)
AKR/J	ENSMUSG00220048696	lncRNA gene	Chr4:135584593-135588765 (+)
BALB/cJ	ENSMUSG00180046362	lncRNA gene	Chr4:134218513-134222639 (+)
BALB/cJ	ENSMUSG00180043741	protein coding gene	Chr4:134218913-134222556 (+)
C3H/HeJ	ENSMUSG00175040689	lncRNA gene	Chr4:135246129-135250296 (+)
C57BL/6NJ	ENSMUSG00215048226	protein coding gene	Chr4:136765416-136769061 (+)
C57BL/6NJ	ENSMUSG00215050852	lncRNA gene	Chr4:136765016-136769143 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003591	antisense lncRNA gene	Chr4:131766693-131770819 (+)
CAST/EiJ	ENSTCUG00005013997	lncRNA gene	Chr4:136205471-136209619 (+)
CBA/J	ENSMUSG00210030342	lncRNA gene	Chr4:134870038-134874205 (+)
DBA/2J	ENSMUSG00185051696	lncRNA gene	Chr4:136371179-136375290 (+)
DBA/2J	ENSMUSG00185050367	protein coding gene	Chr4:136371582-136375205 (+)
FVB/NJ	ENSMUSG00205043978	lncRNA gene	Chr4:134634163-134638335 (+)
FVB/NJ	ENSMUSG00205019583	protein coding gene	Chr4:134634566-134638229 (+)
JF1/MsJ	ENSUMUG00000046751	lncRNA gene	Chr4:137067735-137071937 (+)
LP/J	ENSMUSG00230039224	protein coding gene	Chr4:140170229-140173881 (+)
LP/J	ENSMUSG00230040505	lncRNA gene	Chr4:140169826-140173991 (+)
NOD/ShiLtJ	ENSMUSG00190039302	lncRNA gene	Chr4:134623866-134627978 (+)
NOD/ShiLtJ	ENSMUSG00190023006	protein coding gene	Chr4:134624269-134627893 (+)
NZO/HlLtJ	ENSMUSG00225008004	protein coding gene	Chr4:146120688-146124351 (+)
NZO/HlLtJ	ENSMUSG00225010667	lncRNA gene	Chr4:146120285-146124457 (+)
PWK/PhJ	ENSLUMG00010046354	lncRNA gene	Chr4:134057919-134062028 (+)
SPRET/EiJ	ENSMSPG00010035776	lncRNA gene	Chr4:136104333-136108457 (+)
WSB/EiJ	ENSIUOG00005048457	lncRNA gene	Chr4:134522956-134527097 (+)

Homology

• Gene Tree
  Tmem51os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  2
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  3 involving Tmem51os1
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073728 (Evidence)
• NCBI Gene
  100038693

Representative Sequences			Length	Strain/Species
genomic	100038693	NCBI Gene Model | MGI Sequence Detail	3804	C57BL/6J
transcript	NR_027137	RefSeq | MGI Sequence Detail	1758	C57BL/6
polypeptide	Q3TYY9	UniProt | EBI | MGI Sequence Detail	73	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9