B230104I21Rik Gene Detail

Summary

• Symbol
  B230104I21Rik
• Name
  RIKEN cDNA B230104I21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642713
  NCBI Gene: 100038561
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:154420584-154434491 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 84.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  461 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642713	lncRNA gene	Chr4:154420584-154434491 (+)
129S1/SvImJ	ENSMUSG00200019788	lncRNA gene	Chr4:145486893-145500694 (+)
A/J	ENSMUSG00195021156	lncRNA gene	Chr4:147141740-147155543 (+)
AKR/J	ENSMUSG00220027986	lncRNA gene	Chr4:146728328-146742129 (+)
BALB/cJ	ENSMUSG00180002746	lncRNA gene	Chr4:144802443-144816242 (+)
C3H/HeJ	ENSMUSG00175019154	lncRNA gene	Chr4:148108664-148122463 (+)
C57BL/6NJ	ENSMUSG00215028746	lncRNA gene	Chr4:146938072-146951864 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026873	protein coding gene	Chr4:144247079-144261346 (+)
CAST/EiJ	ENSTCUG00005036764	lncRNA gene	Chr4:150804756-150818551 (+)
CBA/J	ENSMUSG00210006442	lncRNA gene	Chr4:146766969-146780768 (+)
DBA/2J	ENSMUSG00185017279	lncRNA gene	Chr4:150324127-150337928 (+)
FVB/NJ	ENSMUSG00205022060	lncRNA gene	Chr4:145220740-145234540 (+)
JF1/MsJ	ENSUMUG00000000458	lncRNA gene	Chr4:153336185-153350074 (+)
LP/J	ENSMUSG00230025783	lncRNA gene	Chr4:157045687-157059579 (+)
NOD/ShiLtJ	ENSMUSG00190004226	lncRNA gene	Chr4:146424434-146438237 (+)
NZO/HlLtJ	ENSMUSG00225024648	lncRNA gene	Chr4:161040338-161054224 (+)
PWK/PhJ	ENSLUMG00010028948	lncRNA gene	Chr4:145597853-145611726 (+)
SPRET/EiJ	ENSMSPG00010026609	lncRNA gene	Chr4:147554719-147568624 (+)
WSB/EiJ	ENSIUOG00005006895	lncRNA gene	Chr4:144634355-144648149 (+)

Homology

• Gene Tree
  B230104I21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving B230104I21Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000097871 (Evidence)
• NCBI Gene
  100038561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097871	Ensembl Gene Model | MGI Sequence Detail	13908	C57BL/6J
transcript	ENSMUST00000181143	Ensembl | MGI Sequence Detail	992	Not Applicable
polypeptide	Q3USW4	UniProt | EBI | MGI Sequence Detail	141	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16