Gm10224 Pseudogene Detail

Summary

• Symbol
  Gm10224
• Name
  predicted pseudogene 10224

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3642708
  NCBI Gene: 100043805
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:122675373-122675987 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642708	pseudogene	Chr6:122675300-122676024 (-)
129S1/SvImJ	ENSMUSG00200051242	pseudogene	Chr6:119851764-119852378 (-)
A/J	ENSMUSG00195048188	pseudogene	Chr6:119276128-119276742 (-)
AKR/J	ENSMUSG00220034505	pseudogene	Chr6:118147222-118147836 (-)
BALB/cJ	ENSMUSG00180049931	pseudogene	Chr6:119634941-119635555 (-)
C3H/HeJ	ENSMUSG00175050581	pseudogene	Chr6:119298954-119299568 (-)
C57BL/6NJ	ENSMUSG00215048181	pseudogene	Chr6:119654289-119654903 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000186	pseudogene	Chr1:95065889-95066502 (+)
CAST/EiJ	ENSTCUG00005050736	pseudogene	Chr6:119336003-119336617 (-)
CBA/J	ENSMUSG00210009743	pseudogene	Chr11:18456305-18456919 (-)
CBA/J	ENSMUSG00210045339	pseudogene	Chr6:119401460-119402074 (-)
DBA/2J	ENSMUSG00185050178	pseudogene	Chr6:120042824-120043438 (-)
FVB/NJ	ENSMUSG00205051941	pseudogene	Chr6:118336353-118336967 (-)
JF1/MsJ	ENSUMUG00000039639	pseudogene	ChrX:175822182-175822796 (+)
JF1/MsJ	ENSUMUG00000026071	pseudogene	Chr10:61478229-61478843 (+)
JF1/MsJ	ENSUMUG00000041390	pseudogene	Chr19:54840710-54841324 (-)
JF1/MsJ	ENSUMUG00000054004	pseudogene	Chr6:118663287-118663901 (-)
JF1/MsJ	ENSUMUG00000055352	pseudogene	Chr5:135478850-135479464 (-)
LP/J	ENSMUSG00230020546	pseudogene	Chr10:62042221-62042835 (+)
LP/J	ENSMUSG00230048692	pseudogene	Chr6:121244574-121245188 (-)
NOD/ShiLtJ	ENSMUSG00190009112	pseudogene	Chr11:18612534-18613148 (-)
NOD/ShiLtJ	ENSMUSG00190052528	pseudogene	Chr6:119014112-119014726 (-)
NZO/HlLtJ	ENSMUSG00225017584	pseudogene	Chr6:123144119-123144733 (-)
PWK/PhJ	ENSLUMG00010049148	pseudogene	Chr6:117972044-117972658 (-)
SPRET/EiJ	ENSMSPG00010045248	pseudogene	Chr6:120438400-120439017 (-)
WSB/EiJ	ENSIUOG00005044541	pseudogene	Chr6:119648444-119649058 (-)

Homology

• Gene Tree
  Gm10224
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000080932 (Evidence)
• NCBI Gene
  100043805

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080932	Ensembl Gene Model | MGI Sequence Detail	615	C57BL/6J
transcript	ENSMUST00000119496	Ensembl | MGI Sequence Detail	615	Not Applicable
polypeptide	XP_036008360	RefSeq | MGI Sequence Detail	204	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10224:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62941	Chr6:122676023-122676024 (-)	-37 bp