Gm9962 Gene Detail

Summary

• Symbol
  Gm9962
• Name
  predicted gene 9962

• Feature Type
  lncRNA gene
• IDs
  MGI:3642695
  NCBI Gene: 791383
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:57037020-57059689 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  831 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642695	lncRNA gene	Chr7:57036248-57068690 (+)
129S1/SvImJ	ENSMUSG00200009422	lncRNA gene	Chr7:44528400-44551076 (+)
A/J	ENSMUSG00195011346	lncRNA gene	Chr7:48682760-48705548 (+)
AKR/J	ENSMUSG00220011704	lncRNA gene	Chr7:42975118-42997797 (+)
BALB/cJ	ENSMUSG00180011132	lncRNA gene	Chr7:45551381-45574018 (+)
C3H/HeJ	ENSMUSG00175003599	lncRNA gene	Chr7:46033465-46056137 (+)
C57BL/6NJ	ENSMUSG00215002164	lncRNA gene	Chr7:45369933-45392606 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004028	antisense lncRNA gene	Chr7:59894051-59916448 (+)
CAST/EiJ	ENSTCUG00005023862	lncRNA gene	Chr7:48826643-48849551 (+)
CBA/J	ENSMUSG00210017586	lncRNA gene	Chr7:46415017-46437689 (+)
DBA/2J	ENSMUSG00185006803	lncRNA gene	Chr7:50318033-50340666 (+)
FVB/NJ	ENSMUSG00205001702	lncRNA gene	Chr7:46119185-46141973 (+)
JF1/MsJ	ENSUMUG00000017453	lncRNA gene	Chr7:55065888-55088514 (+)
LP/J	ENSMUSG00230006498	lncRNA gene	Chr7:55853344-55876015 (+)
NOD/ShiLtJ	ENSMUSG00190003875	lncRNA gene	Chr7:46445840-46468506 (+)
NZO/HlLtJ	ENSMUSG00225011140	lncRNA gene	Chr7:54034023-54056810 (+)
PWK/PhJ	ENSLUMG00010002546	lncRNA gene	Chr7:44997684-45020297 (+)
SPRET/EiJ	ENSMSPG00010001721	lncRNA gene	Chr7:45052984-45075990 (+)
WSB/EiJ	ENSIUOG00005006087	lncRNA gene	Chr7:46700579-46723335 (+)

Homology

• Gene Tree
  Gm9962
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  33 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  1
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  3 involving Gm9962
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055048 (Evidence)
• NCBI Gene
  791383

Representative Sequences			Length	Strain/Species
genomic	791383	NCBI Gene Model | MGI Sequence Detail	22670	C57BL/6J
transcript	NR_033504	RefSeq | MGI Sequence Detail	1417	C57BL/6
polypeptide	Q8C7L6	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 41

  Diseases 4

  Phenotypes 33
• Earliest
  J:56614 Gabriel JM, et al., A transgene insertion creating a heritable chromosome deletion mouse model of Prader-Willi and angelman syndromes. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9258-63
• Latest
  J:390137 Otani Y, et al., Restoration of axon initial segment plasticity via chemogenetic activation rescues autism-related behaviors. Cell Death Dis. 2026 May 19;17(1)