Gm10538 Gene Detail

Summary

• Symbol
  Gm10538
• Name
  predicted gene 10538

• Feature Type
  lncRNA gene
• IDs
  MGI:3642693
  NCBI Gene: 100038653
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:132657091-132660564 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 57.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  252 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642693	lncRNA gene	Chr1:132657082-132660564 (+)
129S1/SvImJ	ENSMUSG00200009326	lncRNA gene	Chr1:130218945-130222416 (+)
A/J	ENSMUSG00195045105	lncRNA gene	Chr1:129323840-129327311 (+)
AKR/J	ENSMUSG00220050357	lncRNA gene	Chr1:129150051-129153552 (+)
BALB/cJ	ENSMUSG00180040989	lncRNA gene	Chr1:129869416-129872887 (+)
C3H/HeJ	ENSMUSG00175046930	lncRNA gene	Chr1:129568345-129571816 (+)
C57BL/6NJ	ENSMUSG00215046161	lncRNA gene	Chr1:129582219-129585690 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002396	antisense lncRNA gene	Chr1:124328891-124332352 (+)
CAST/EiJ	ENSTCUG00005039747	lncRNA gene	Chr1:128488137-128491602 (+)
CBA/J	ENSMUSG00210028870	lncRNA gene	Chr1:129464156-129467627 (+)
DBA/2J	ENSMUSG00185035215	lncRNA gene	Chr1:133817646-133821117 (+)
FVB/NJ	ENSMUSG00205045277	lncRNA gene	Chr1:128800595-128804066 (+)
JF1/MsJ	ENSUMUG00000052812	lncRNA gene	Chr1:132985034-132988509 (+)
LP/J	ENSMUSG00230039477	lncRNA gene	Chr1:133407195-133410666 (+)
NOD/ShiLtJ	ENSMUSG00190045777	lncRNA gene	Chr1:129478353-129481824 (+)
NZO/HlLtJ	ENSMUSG00225021825	lncRNA gene	Chr1:137129246-137132717 (+)
PWK/PhJ	ENSLUMG00010029509	lncRNA gene	Chr1:128594453-128597928 (+)
SPRET/EiJ	ENSMSPG00010046856	lncRNA gene	Chr1:131400037-131403469 (+)
WSB/EiJ	ENSIUOG00005047824	lncRNA gene	Chr1:129211595-129215066 (+)

Homology

• Gene Tree
  Gm10538
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm10538
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000101126 (Evidence)
• NCBI Gene
  100038653

Representative Sequences			Length	Strain/Species
genomic	100038653	NCBI Gene Model | MGI Sequence Detail	3474	C57BL/6J
transcript	NR_045892	RefSeq | MGI Sequence Detail	1879	C57BL/6
polypeptide	Q3V0M3	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm10538:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8750	Chr1:132657064-132657107 (+)	-5 bp