Gm10505 Gene Detail

Summary

• Symbol
  Gm10505
• Name
  predicted gene 10505

• Feature Type
  lncRNA gene
• IDs
  MGI:3642687
  NCBI Gene: 100038429
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:27544170-27563806 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642687	lncRNA gene	Chr17:27544009-27563820 (+)
129S1/SvImJ	ENSMUSG00200054321	lncRNA gene	Chr17:23003314-23023110 (+)
A/J	ENSMUSG00195054394	lncRNA gene	Chr17:24021026-24040823 (+)
AKR/J	ENSMUSG00220053377	lncRNA gene	Chr17:23068569-23088366 (+)
BALB/cJ	ENSMUSG00180050468	lncRNA gene	Chr17:23494214-23514008 (+)
C3H/HeJ	ENSMUSG00175054084	lncRNA gene	Chr17:23057155-23076947 (+)
C57BL/6NJ	ENSMUSG00215054613	lncRNA gene	Chr17:23054587-23074383 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005187	lincRNA gene	Chr17:23195882-23198376 (+)
CAST/EiJ	ENSTCUG00005051995	lncRNA gene	Chr17:23779560-23799365 (+)
CBA/J	ENSMUSG00210050997	lncRNA gene	Chr17:22895921-22915716 (+)
DBA/2J	ENSMUSG00185054391	lncRNA gene	Chr17:25109206-25128999 (+)
FVB/NJ	ENSMUSG00205053029	lncRNA gene	Chr17:23371944-23391742 (+)
JF1/MsJ	ENSUMUG00000057389	lncRNA gene	Chr17:24562576-24582348 (+)
LP/J	ENSMUSG00230055285	lncRNA gene	Chr17:26634143-26643052 (+)
LP/J	ENSMUSG00230055214	lncRNA gene	Chr17:26519143-26538936 (+)
NOD/ShiLtJ	ENSMUSG00190054467	lncRNA gene	Chr17:23002112-23021909 (+)
NZO/HlLtJ	ENSMUSG00225054590	lncRNA gene	Chr17:28596044-28615850 (+)
NZO/HlLtJ	ENSMUSG00225054574	lncRNA gene	Chr17:28428087-28447859 (+)
NZO/HlLtJ	ENSMUSG00225054086	protein coding gene	Chr17:28441292-28446809 (+)
PWK/PhJ	ENSLUMG00010053313	lncRNA gene	Chr17:22483734-22503557 (+)
SPRET/EiJ	ENSMSPG00010050220	lncRNA gene	Chr17:23790189-23809974 (+)
WSB/EiJ	ENSIUOG00005052443	lncRNA gene	Chr17:23760412-23780209 (+)

Homology

• Gene Tree
  Gm10505
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm10505
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  79
• RefSeq
  13
• UniProt
  1

• Ensembl
  ENSMUSG00000073430 (Evidence)
• NCBI Gene
  100038429

Representative Sequences			Length	Strain/Species
genomic	100038429	NCBI Gene Model | MGI Sequence Detail	19637	C57BL/6J
transcript	NR_167661	RefSeq | MGI Sequence Detail	1890	C57BL/6
polypeptide	Q3UUN7	UniProt | EBI | MGI Sequence Detail	129	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm10505:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143315	Chr17:27544168-27544172 (+)	0 bp
Tssr143319	Chr17:27561427-27561444 (+)	17,266 bp