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Trav13n-4 Gene Detail
Summary
  • Symbol
    Trav13n-4
  • Name
    T cell receptor alpha variable 13N-4
  • Synonyms
    ENSMUSG00000072517, Gm10907
Location &
Maps
more
  • Sequence Map
    Chr14:53599825-53601563 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.33 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    85 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642678
 gene segment Chr14:53599724-53601563 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002514
 gene segment Chr14:45919629-45919895 (+)
AKR/J MGP_AKRJ_G0002509
 gene segment Chr14:47943049-47943315 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0002483
 gene segment Chr14:47672873-47673139 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002433
 gene segment Chr14:44040477-44040702 (+)
CBA/J MGP_CBAJ_G0002480
 gene segment Chr14:51038080-51038346 (+)
DBA/2J MGP_DBA2J_G0002484
 gene segment Chr14:45688181-45688447 (+)
FVB/NJ MGP_FVBNJ_G0002506
 gene segment Chr14:45562653-45562919 (+)
LP/J MGP_LPJ_G0002535
 gene segment Chr14:47814372-47814638 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002659
 gene segment Chr14:47192702-47192968 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Synonyms
    TCRAV13S1, TCRAV22S1
  • Links
    NCBI Gene ID: 28661
    UniProt: A0A0B4J277

  • Chr Location
    14q11.2; chr14:22070557-22071208 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126460 NCBI Gene Model | MGI Sequence Detail 1739 C57BL/6J ±  kb
polypeptide A0A0G2JG01 UniProt | EBI | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory