Gm9794 Pseudogene Detail

Summary

• Symbol
  Gm9794
• Name
  predicted pseudogene 9794

• Feature Type
  pseudogene
• IDs
  MGI:3642653
  NCBI Gene: 100042008
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:66852305-66852727 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642653	pseudogene	Chr6:66852246-66852748 (-)
129S1/SvImJ	ENSMUSG00200011995	pseudogene	Chr6:63764868-63765290 (-)
A/J	ENSMUSG00195043684	pseudogene	Chr6:63509367-63509789 (-)
A/J	ENSMUSG00195011214	pseudogene	Chr1:76753790-76754212 (+)
AKR/J	ENSMUSG00220043801	pseudogene	Chr6:63000174-63000596 (-)
BALB/cJ	ENSMUSG00180041866	pseudogene	Chr6:63865274-63865696 (-)
BALB/cJ	ENSMUSG00180022046	pseudogene	Chr1:77016312-77016734 (+)
BALB/cJ	ENSMUSG00180047001	pseudogene	Chr17:30179372-30179794 (+)
C3H/HeJ	ENSMUSG00175050900	pseudogene	Chr6:113585445-113585867 (+)
C3H/HeJ	ENSMUSG00175018757	pseudogene	Chr1:77160323-77160745 (+)
C57BL/6NJ	ENSMUSG00215043915	pseudogene	Chr6:63838261-63838683 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038235	pseudogene	Chr6:64148545-64148704 (-)
CBA/J	ENSMUSG00210039646	pseudogene	Chr6:63654947-63655369 (-)
DBA/2J	ENSMUSG00185043492	pseudogene	Chr6:64226010-64226432 (-)
DBA/2J	ENSMUSG00185055933	pseudogene	Chr17:32198681-32199103 (+)
FVB/NJ	ENSMUSG00205043113	pseudogene	Chr6:63649629-63650051 (-)
FVB/NJ	ENSMUSG00205041819	pseudogene	Chr1:76472968-76473390 (+)
JF1/MsJ	ENSUMUG00000045872	pseudogene	Chr6:63588556-63588715 (-)
LP/J	ENSMUSG00230025411	pseudogene	Chr6:65348562-65348984 (-)
NOD/ShiLtJ	ENSMUSG00190038536	pseudogene	Chr6:63528146-63528568 (-)
NOD/ShiLtJ	ENSMUSG00190054495	pseudogene	Chr17:29678269-29678691 (+)
NZO/HlLtJ	ENSMUSG00225021693	pseudogene	Chr6:67341836-67342258 (-)
PWK/PhJ	ENSLUMG00010022403	pseudogene	Chr6:62799934-62800093 (-)
SPRET/EiJ	ENSMSPG00010027651	pseudogene	Chr6:64639921-64640080 (-)
WSB/EiJ	ENSIUOG00005024803	pseudogene	Chr6:64301496-64301655 (-)

Homology

• Gene Tree
  Gm9794
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000107176 (Evidence)
• NCBI Gene
  100042008

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107176	Ensembl Gene Model | MGI Sequence Detail	423	C57BL/6J
transcript	ENSMUST00000202370	Ensembl | MGI Sequence Detail	423	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm9794:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61229	Chr6:66852733-66852750 (-)	-15 bp
Tssr61228	Chr6:66852634-66852673 (-)	73 bp
Tssr61227	Chr6:66852411-66852418 (-)	312 bp