Gm10690 Gene Detail

Summary

• Symbol
  Gm10690
• Name
  predicted gene 10690

• Feature Type
  lncRNA gene
• IDs
  MGI:3642614
  NCBI Gene: 100038649
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:42175654-42184825 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 23.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  354 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642614	lncRNA gene	Chr9:42175654-42184825 (+)
129S1/SvImJ	ENSMUSG00200040613	lncRNA gene	Chr9:39250536-39252523 (+)
A/J	ENSMUSG00195049663	lncRNA gene	Chr9:39008758-39010753 (+)
AKR/J	ENSMUSG00220046285	lncRNA gene	Chr9:39098618-39100613 (+)
BALB/cJ	ENSMUSG00180047205	lncRNA gene	Chr9:39120499-39122494 (+)
C3H/HeJ	ENSMUSG00175050200	lncRNA gene	Chr9:39132378-39134373 (+)
C57BL/6NJ	ENSMUSG00215019518	protein coding gene	Chr9:39094858-39103666 (+)
C57BL/6NJ	ENSMUSG00215037743	lncRNA gene	Chr9:39094424-39096417 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045418	lncRNA gene	Chr9:39089624-39091619 (+)
CBA/J	ENSMUSG00210048327	lncRNA gene	Chr9:39178127-39180122 (+)
DBA/2J	ENSMUSG00185037969	lncRNA gene	Chr9:39236305-39238300 (+)
FVB/NJ	ENSMUSG00205044539	lncRNA gene	Chr9:39497480-39499475 (+)
JF1/MsJ	ENSUMUG00000051552	lncRNA gene	Chr9:39284846-39286839 (+)
LP/J	ENSMUSG00230034001	lncRNA gene	Chr9:39541233-39543220 (+)
NOD/ShiLtJ	ENSMUSG00190033444	lncRNA gene	Chr9:39326472-39328467 (+)
NZO/HlLtJ	ENSMUSG00225021720	lncRNA gene	Chr9:39507816-39509811 (+)
PWK/PhJ	ENSLUMG00010047768	lncRNA gene	Chr9:39239407-39241400 (+)
SPRET/EiJ	ENSMSPG00010035950	lncRNA gene	Chr9:40010088-40012053 (+)
WSB/EiJ	ENSIUOG00005046904	lncRNA gene	Chr9:38741829-38743822 (+)

Homology

• Gene Tree
  Gm10690
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000120111 (Evidence)
• NCBI Gene
  100038649

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120111	Ensembl Gene Model | MGI Sequence Detail	9172	C57BL/6J
transcript	ENSMUST00000241434	Ensembl | MGI Sequence Detail	2615	Not Applicable
polypeptide	Q3U5D7	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84545	Chr9:42175767-42175775 (+)	117 bp