Rpl30-ps6 Pseudogene Detail

Summary

• Symbol
  Rpl30-ps6
• Name
  ribosomal protein L30, pseudogene 6
• Synonyms
  Gm10200

• Feature Type
  pseudogene
• IDs
  MGI:3642608
  NCBI Gene: 100040414
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:86401381-86401728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642608	pseudogene	Chr1:86401284-86401742 (+)
129S1/SvImJ	ENSMUSG00200039114	pseudogene	Chr1:83617160-83617507 (+)
A/J	ENSMUSG00195034667	pseudogene	Chr1:83189663-83190010 (+)
AKR/J	ENSMUSG00220045744	pseudogene	Chr1:83312805-83313152 (+)
BALB/cJ	ENSMUSG00180019192	pseudogene	Chr1:83488537-83488884 (+)
C3H/HeJ	ENSMUSG00175001468	pseudogene	Chr1:83368403-83368750 (+)
C57BL/6NJ	ENSMUSG00215032225	pseudogene	Chr1:83290404-83290751 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009190	pseudogene	Chr1:78973791-78974136 (+)
CAST/EiJ	ENSTCUG00005007979	pseudogene	Chr1:82943884-82944228 (+)
CBA/J	ENSMUSG00210012514	pseudogene	Chr1:83212853-83213200 (+)
DBA/2J	ENSMUSG00185017594	pseudogene	Chr1:87685098-87685445 (+)
FVB/NJ	ENSMUSG00205044471	pseudogene	Chr1:82624040-82624387 (+)
JF1/MsJ	ENSUMUG00000019010	pseudogene	Chr1:86461168-86461515 (+)
LP/J	ENSMUSG00230022330	pseudogene	Chr1:86963065-86963412 (+)
NOD/ShiLtJ	ENSMUSG00190036609	pseudogene	Chr1:83268085-83268432 (+)
NZO/HlLtJ	ENSMUSG00225004737	pseudogene	Chr1:90865883-90866230 (+)
PWK/PhJ	ENSLUMG00010046430	pseudogene	Chr1:82837498-82837845 (+)
SPRET/EiJ	ENSMSPG00010047892	pseudogene	Chr1:84840137-84840470 (+)
WSB/EiJ	ENSIUOG00005044182	pseudogene	Chr1:82870287-82870634 (+)

Homology

• Gene Tree
  Rpl30-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl30-ps6
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000101328 (Evidence)
• NCBI Gene
  100040414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101328	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000163337	Ensembl | MGI Sequence Detail	348	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Rpl30-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7757	Chr1:86401249-86401290 (+)	-111 bp