Gm10421 Gene Detail

Summary

• Symbol
  Gm10421
• Name
  predicted gene 10421

• Feature Type
  lncRNA gene
• IDs
  MGI:3642601
  NCBI Gene: 100038689
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:117108143-117114889 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642601	lncRNA gene	Chr12:117108136-117115332 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015244	unclassified non-coding RNA gene	Chr12:120032818-120039930 (-)
A/J	MGP_AJ_G0015218	unclassified non-coding RNA gene	Chr12:115631037-115638181 (-)
AKR/J	MGP_AKRJ_G0015181	unclassified non-coding RNA gene	Chr12:119126752-119135953 (-)
BALB/cJ	MGP_BALBcJ_G0015180	unclassified non-coding RNA gene	Chr12:116048534-116055643 (-)
C3H/HeJ	MGP_C3HHeJ_G0015004	unclassified non-coding RNA gene	Chr12:119419861-119426998 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015637	unclassified non-coding RNA gene	Chr12:123807819-123814935 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013379	unclassified non-coding RNA gene	Chr12:112024030-112031421 (-)
CAST/EiJ	MGP_CASTEiJ_G0014557	unclassified non-coding RNA gene	Chr12:113268597-113275900 (-)
CBA/J	MGP_CBAJ_G0014983	unclassified non-coding RNA gene	Chr12:128702867-128709976 (-)
DBA/2J	MGP_DBA2J_G0015076	unclassified non-coding RNA gene	Chr12:115022064-115029829 (-)
FVB/NJ	MGP_FVBNJ_G0015087	unclassified non-coding RNA gene	Chr12:113696103-113703238 (-)
LP/J	MGP_LPJ_G0015157	unclassified non-coding RNA gene	Chr12:120074962-120082078 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015114	unclassified non-coding RNA gene	Chr12:132001165-132008281 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015676	unclassified non-coding RNA gene	Chr12:118308228-118315358 (-)
PWK/PhJ	MGP_PWKPhJ_G0014349	unclassified non-coding RNA gene	Chr12:109762091-109769426 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014136	unclassified non-coding RNA gene	Chr12:111247608-111254842 (-)
WSB/EiJ	MGP_WSBEiJ_G0014660	unclassified non-coding RNA gene	Chr12:119259511-119266640 (-)

Homology

• Gene Tree
  Gm10421
  

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000099907 (Evidence)
• NCBI Gene
  100038689

Representative Sequences			Length	Strain/Species
genomic	100038689	NCBI Gene Model | MGI Sequence Detail	6747	C57BL/6J
transcript	NR_033538	RefSeq | MGI Sequence Detail	858	C57BL/6
polypeptide	Q3UUI8	UniProt | EBI | MGI Sequence Detail	91	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm10421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118141	Chr12:117114883-117114896 (-)	-1 bp
Tssr118140	Chr12:117114859-117114870 (-)	24 bp