Gm10605 Gene Detail

Summary

• Symbol
  Gm10605
• Name
  predicted gene 10605

• Feature Type
  lncRNA gene
• IDs
  MGI:3642596
  NCBI Gene: 100038557
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:99274598-99280927 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642596	lncRNA gene	Chr7:99274598-99280927 (+)
129S1/SvImJ	ENSMUSG00200050104	lncRNA gene	Chr7:86098469-86104243 (+)
A/J	ENSMUSG00195040318	lncRNA gene	Chr7:90603859-90609637 (+)
AKR/J	ENSMUSG00220052018	lncRNA gene	Chr7:84020486-84026266 (+)
BALB/cJ	ENSMUSG00180035724	lncRNA gene	Chr7:87276865-87282636 (+)
C3H/HeJ	ENSMUSG00175024368	lncRNA gene	Chr7:87921603-87927378 (+)
C57BL/6NJ	ENSMUSG00215036641	lncRNA gene	Chr7:87121047-87126824 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006595	lincRNA gene	Chr7:102308057-102313746 (+)
CAST/EiJ	ENSTCUG00005034638	lncRNA gene	Chr7:90514177-90519938 (+)
CBA/J	ENSMUSG00210025679	lncRNA gene	Chr7:87775321-87781101 (+)
DBA/2J	ENSMUSG00185056875	lncRNA gene	Chr7:92096363-92102138 (+)
FVB/NJ	ENSMUSG00205040232	lncRNA gene	Chr7:87775018-87780808 (+)
JF1/MsJ	ENSUMUG00000051230	lncRNA gene	Chr7:97002335-97008104 (+)
LP/J	ENSMUSG00230044723	lncRNA gene	Chr7:98223487-98229245 (+)
NOD/ShiLtJ	ENSMUSG00190021339	lncRNA gene	Chr7:88048215-88053976 (+)
NZO/HlLtJ	ENSMUSG00225050972	lncRNA gene	Chr7:96418325-96424109 (+)
PWK/PhJ	ENSLUMG00010050073	lncRNA gene	Chr7:86235932-86241689 (+)
SPRET/EiJ	ENSMSPG00010013058	lncRNA gene	Chr7:87474147-87479873 (+)
WSB/EiJ	ENSIUOG00005010682	lncRNA gene	Chr7:88393081-88398843 (+)

Homology

• Gene Tree
  Gm10605
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10605
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• UniProt
  1

• Ensembl
  ENSMUSG00000097974 (Evidence)
• NCBI Gene
  100038557

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097974	Ensembl Gene Model | MGI Sequence Detail	6330	C57BL/6J
transcript	ENSMUST00000183019	Ensembl | MGI Sequence Detail	3198	Not Applicable
polypeptide	Q3URZ5	UniProt | EBI | MGI Sequence Detail	164	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm10605:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2340	Chr7:99274721-99274722 (+)	124 bp
Tssr68075	Chr7:99275159-99275225 (+)	594 bp