Sox5it Gene Detail

Summary

• Symbol
  Sox5it
• Name
  SRY (sex determining region Y)-box 5, intronic transcript
• Synonyms
  Gm10396

• Feature Type
  sense intronic lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3642586
  NCBI Gene: 100038723
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:144610765-144618476 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 77.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642586	sense intronic lncRNA gene	Chr6:144610765-144618476 (-)
129S1/SvImJ	ENSMUSG00200033852	lncRNA gene	Chr6:142165092-142167385 (-)
129S1/SvImJ	ENSMUSG00200033225	protein coding gene	Chr6:142165791-142167461 (-)
A/J	ENSMUSG00195007849	protein coding gene	Chr6:141072048-141073718 (-)
A/J	ENSMUSG00195008456	lncRNA gene	Chr6:141071349-141073642 (-)
AKR/J	ENSMUSG00220032745	lncRNA gene	Chr6:139303979-139306305 (-)
BALB/cJ	ENSMUSG00180018173	lncRNA gene	Chr6:141198554-141200847 (-)
BALB/cJ	ENSMUSG00180017179	protein coding gene	Chr6:141199253-141200923 (-)
C3H/HeJ	ENSMUSG00175035654	lncRNA gene	Chr6:141104000-141106326 (-)
C57BL/6NJ	ENSMUSG00215017081	protein coding gene	Chr6:141265381-141267051 (-)
C57BL/6NJ	ENSMUSG00215028541	lncRNA gene	Chr6:141264682-141266975 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034606	sense intronic lncRNA gene	Chr6:142461708-142463985 (-)
CAST/EiJ	ENSTCUG00005037859	lncRNA gene	Chr6:141895118-141897445 (-)
CBA/J	ENSMUSG00210005247	lncRNA gene	Chr6:141171145-141173438 (-)
CBA/J	ENSMUSG00210003974	protein coding gene	Chr6:141171844-141173514 (-)
DBA/2J	ENSMUSG00185016036	lncRNA gene	Chr6:141817325-141819651 (-)
FVB/NJ	ENSMUSG00205033085	lncRNA gene	Chr6:140142640-140144933 (-)
FVB/NJ	ENSMUSG00205018372	protein coding gene	Chr6:140143339-140145009 (-)
JF1/MsJ	ENSUMUG00000011492	lncRNA gene	Chr6:140483545-140485883 (-)
LP/J	ENSMUSG00230005737	lncRNA gene	Chr6:142924443-142926736 (-)
LP/J	ENSMUSG00230005551	protein coding gene	Chr6:142925142-142926812 (-)
NOD/ShiLtJ	ENSMUSG00190006540	protein coding gene	Chr6:141640205-141641875 (-)
NOD/ShiLtJ	ENSMUSG00190006901	lncRNA gene	Chr6:141639506-141641799 (-)
NZO/HlLtJ	ENSMUSG00225013940	lncRNA gene	Chr6:145807921-145810247 (-)
PWK/PhJ	ENSLUMG00010037000	lncRNA gene	Chr6:139555415-139557749 (-)
SPRET/EiJ	ENSMSPG00010017435	lncRNA gene	Chr6:143463015-143465466 (-)
WSB/EiJ	ENSIUOG00005023757	lncRNA gene	Chr6:141840503-141842796 (-)

Homology

• Gene Tree
  Sox5it
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• UniProt
  1

• Ensembl
  ENSMUSG00000072677 (Evidence)
• NCBI Gene
  100038723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072677	Ensembl Gene Model | MGI Sequence Detail	7712	C57BL/6J
transcript	ENSMUST00000144026	Ensembl | MGI Sequence Detail	1233	Not Applicable
polypeptide	Q3V428	UniProt | EBI | MGI Sequence Detail	69	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;