Gm9889 Gene Detail

Summary

• Symbol
  Gm9889
• Name
  predicted gene 9889

• Feature Type
  lncRNA gene
• IDs
  MGI:3642568
  NCBI Gene: 791369
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:115508672-115510377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 50.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642568	lncRNA gene	Chr3:115508672-115510377 (+)
129S1/SvImJ	ENSMUSG00200026316	lncRNA gene	Chr3:112168526-112170114 (+)
A/J	ENSMUSG00195016509	lncRNA gene	Chr3:112417060-112418650 (+)
AKR/J	ENSMUSG00220032913	lncRNA gene	Chr3:110824370-110825960 (+)
BALB/cJ	ENSMUSG00180029628	lncRNA gene	Chr3:112361719-112363309 (+)
C3H/HeJ	ENSMUSG00175026667	lncRNA gene	Chr3:111902305-111903895 (+)
C57BL/6NJ	ENSMUSG00215007475	lncRNA gene	Chr3:112633458-112635048 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005708	lincRNA gene	Chr3:109447886-109449437 (+)
CAST/EiJ	ENSTCUG00005027525	lncRNA gene	Chr3:112901473-112903070 (+)
CBA/J	ENSMUSG00210002966	lncRNA gene	Chr3:112511102-112512692 (+)
DBA/2J	ENSMUSG00185008480	lncRNA gene	Chr3:113101156-113102746 (+)
FVB/NJ	ENSMUSG00205030412	lncRNA gene	Chr3:111450041-111451631 (+)
JF1/MsJ	ENSUMUG00000005269	lncRNA gene	Chr3:112004108-112005703 (+)
LP/J	ENSMUSG00230012659	lncRNA gene	Chr3:115029424-115031012 (+)
NOD/ShiLtJ	ENSMUSG00190033175	lncRNA gene	Chr3:113450389-113451979 (+)
NZO/HlLtJ	ENSMUSG00225004055	lncRNA gene	Chr3:117523543-117525133 (+)
PWK/PhJ	ENSLUMG00010025485	lncRNA gene	Chr3:111879090-111880684 (+)
SPRET/EiJ	ENSMSPG00010030677	lncRNA gene	Chr3:112506996-112508602 (+)
WSB/EiJ	ENSIUOG00005006980	lncRNA gene	Chr3:112658920-112660510 (+)

Homology

• Gene Tree
  Gm9889
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9889
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052769 (Evidence)
• NCBI Gene
  791369

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052769	Ensembl Gene Model | MGI Sequence Detail	1706	C57BL/6J
transcript	ENSMUST00000064809	Ensembl | MGI Sequence Detail	1706	Not Applicable
polypeptide	Q8BYT7	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm9889:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31332	Chr3:115508805-115508821 (+)	141 bp