Gm10578 Gene Detail

Summary

• Symbol
  Gm10578
• Name
  predicted gene 10578

• Feature Type
  lncRNA gene
• IDs
  MGI:3642555
  NCBI Gene: 100038555
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:136836412-136844338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 82.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  226 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642555	lncRNA gene	Chr7:136836387-136844338 (+)
129S1/SvImJ	ENSMUSG00200046264	lncRNA gene	Chr7:123391819-123399745 (+)
A/J	ENSMUSG00195042670	lncRNA gene	Chr7:127862415-127870341 (+)
AKR/J	ENSMUSG00220016814	lncRNA gene	Chr7:121324157-121332083 (+)
BALB/cJ	ENSMUSG00180040292	lncRNA gene	Chr7:124566235-124574161 (+)
C3H/HeJ	ENSMUSG00175043702	lncRNA gene	Chr7:125294563-125302489 (+)
C57BL/6NJ	ENSMUSG00215048639	lncRNA gene	Chr7:124557139-124565065 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051293	lncRNA gene	Chr7:127869825-127877764 (+)
CBA/J	ENSMUSG00210032776	lncRNA gene	Chr7:125059158-125067091 (+)
DBA/2J	ENSMUSG00185024937	lncRNA gene	Chr7:129352223-129360154 (+)
FVB/NJ	ENSMUSG00205046934	lncRNA gene	Chr7:125021957-125029883 (+)
JF1/MsJ	ENSUMUG00000050158	lncRNA gene	Chr7:134423660-134431578 (+)
LP/J	ENSMUSG00230043708	lncRNA gene	Chr7:135495448-135503374 (+)
NOD/ShiLtJ	ENSMUSG00190035432	lncRNA gene	Chr7:125170949-125178875 (+)
NZO/HlLtJ	ENSMUSG00225052601	lncRNA gene	Chr7:133726245-133734178 (+)
PWK/PhJ	ENSLUMG00010047361	lncRNA gene	Chr7:123579810-123587786 (+)
SPRET/EiJ	ENSMSPG00010045562	lncRNA gene	Chr7:124882771-124890716 (+)
WSB/EiJ	ENSIUOG00005035849	lncRNA gene	Chr7:125873900-125881826 (+)

Homology

• Gene Tree
  Gm10578
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000109722 (Evidence)
• NCBI Gene
  100038555

Representative Sequences			Length	Strain/Species
genomic	100038555	NCBI Gene Model | MGI Sequence Detail	7927	C57BL/6J
transcript	NR_045885	RefSeq | MGI Sequence Detail	2876	C57BL/6
polypeptide	Q3V0B3	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;