Gm15417 Gene Detail

Summary

• Symbol
  Gm15417
• Name
  predicted gene 15417
• Synonyms
  ENSMUSG00000074466

• Feature Type
  lncRNA gene
• IDs
  MGI:3642531
  NCBI Gene: 545539
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:89299171-89306086 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642531	lncRNA gene	Chr3:89294578-89322540 (+)
129S1/SvImJ	ENSMUSG00200040425	lncRNA gene	Chr3:86151890-86161345 (+)
A/J	ENSMUSG00195054067	lncRNA gene	Chr3:86166909-86176369 (+)
AKR/J	ENSMUSG00220051357	lncRNA gene	Chr3:86121474-86130927 (+)
BALB/cJ	ENSMUSG00180049298	lncRNA gene	Chr3:86248967-86258441 (+)
C3H/HeJ	ENSMUSG00175048188	lncRNA gene	Chr3:86099535-86108989 (+)
C57BL/6NJ	ENSMUSG00215049904	lncRNA gene	Chr3:86539639-86549106 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003392	antisense lncRNA gene	Chr3:82122280-82129030 (+)
CAST/EiJ	ENSTCUG00005048649	lncRNA gene	Chr3:85615189-85624716 (+)
CBA/J	ENSMUSG00210047490	lncRNA gene	Chr3:86237178-86246628 (+)
DBA/2J	ENSMUSG00185052947	lncRNA gene	Chr3:86337424-86346893 (+)
FVB/NJ	ENSMUSG00205049925	lncRNA gene	Chr3:85161145-85170597 (+)
JF1/MsJ	ENSUMUG00000053090	lncRNA gene	Chr3:85945891-85955527 (+)
LP/J	ENSMUSG00230036527	lncRNA gene	Chr3:88373199-88382649 (+)
NOD/ShiLtJ	ENSMUSG00190049918	lncRNA gene	Chr3:86622321-86631785 (+)
NZO/HlLtJ	ENSMUSG00225007729	lncRNA gene	Chr3:91128490-91137935 (+)
PWK/PhJ	ENSLUMG00010052632	lncRNA gene	Chr3:85987816-85997357 (+)
SPRET/EiJ	ENSMSPG00010051163	lncRNA gene	Chr3:86850485-86860049 (+)
WSB/EiJ	ENSIUOG00005050749	lncRNA gene	Chr3:86643685-86653143 (+)

Homology

• Gene Tree
  Gm15417
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  19
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15417
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  98
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000074466 (Evidence)
• NCBI Gene
  545539

Representative Sequences			Length	Strain/Species
genomic	545539	NCBI Gene Model | MGI Sequence Detail	6916	C57BL/6J
transcript	NR_040403	RefSeq | MGI Sequence Detail	1464	C57BL/6
polypeptide	Q3UW30	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 8
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm15417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30097	Chr3:89299131-89299177 (+)	-17 bp
Tssr30098	Chr3:89299482-89299515 (+)	328 bp
Tssr30099	Chr3:89299544-89299558 (+)	380 bp
Tssr30100	Chr3:89301166-89301171 (+)	1,998 bp
Tssr30101	Chr3:89301575-89301628 (+)	2,431 bp
Tssr30102	Chr3:89303016-89303029 (+)	3,852 bp