Cox7c-ps1 Pseudogene Detail

Summary

• Symbol
  Cox7c-ps1
• Name
  cytochrome c oxidase subunit 7C, pseudogene 1
• Synonyms
  Gm10012

• Feature Type
  pseudogene
• IDs
  MGI:3642454
  NCBI Gene: 117997402
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26120836-26121027 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642454	pseudogene	Chr17:26120782-26121127 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039679	pseudogene	Chr17:25009555-25009926 (+)
A/J	MGP_AJ_G0039676	pseudogene	Chr17:24275073-24275449 (+)
AKR/J	MGP_AKRJ_G0039603	pseudogene	Chr17:24383446-24383823 (+)
BALB/cJ	MGP_BALBcJ_G0039648	pseudogene	Chr17:24503143-24503622 (+)
C3H/HeJ	MGP_C3HHeJ_G0039311	pseudogene	Chr17:24765501-24767082 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040207	pseudogene	Chr17:26059719-26059910 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039282	pseudogene	Chr17:26983743-26984113 (+)
DBA/2J	MGP_DBA2J_G0039476	pseudogene	Chr17:23878028-23878857 (+)
FVB/NJ	MGP_FVBNJ_G0039431	pseudogene	Chr17:23629683-23630065 (+)
LP/J	MGP_LPJ_G0039516	pseudogene	Chr17:25302748-25303080 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039435	pseudogene	Chr17:26581676-26583719 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038665	pseudogene	Chr17:24758107-24758469 (+)

Homology

• Gene Tree
  Cox7c-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Cox7c-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000057580 (Evidence)
• NCBI Gene
  117997402

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057580	Ensembl Gene Model | MGI Sequence Detail	192	C57BL/6J
transcript	ENSMUST00000078252	Ensembl | MGI Sequence Detail	192	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Cox7c-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5042	Chr17:26120779-26120796 (+)	-48 bp