Cox7c-ps1 Pseudogene Detail

Summary

• Symbol
  Cox7c-ps1
• Name
  cytochrome c oxidase subunit 7C, pseudogene 1
• Synonyms
  Gm10012

• Feature Type
  pseudogene
• IDs
  MGI:3642454
  NCBI Gene: 117997402
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:26120836-26121027 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642454	pseudogene	Chr17:26120782-26121127 (+)
129S1/SvImJ	ENSMUSG00200053895	pseudogene	Chr17:21565830-21566201 (+)
A/J	ENSMUSG00195054599	pseudogene	Chr17:22583012-22583383 (+)
AKR/J	ENSMUSG00220053976	pseudogene	Chr17:21629801-21630172 (+)
BALB/cJ	ENSMUSG00180050713	pseudogene	Chr17:21863847-21864218 (+)
C3H/HeJ	ENSMUSG00175054035	pseudogene	Chr17:21622076-21622447 (+)
C57BL/6NJ	ENSMUSG00215054388	pseudogene	Chr17:21630433-21630804 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051562	pseudogene	Chr17:22211876-22212247 (+)
CBA/J	ENSMUSG00210050867	pseudogene	Chr17:21460911-21461282 (+)
DBA/2J	ENSMUSG00185054890	pseudogene	Chr17:23671262-23671633 (+)
FVB/NJ	ENSMUSG00205053409	pseudogene	Chr17:21926996-21927367 (+)
JF1/MsJ	ENSUMUG00000058072	pseudogene	Chr17:23127342-23127713 (+)
LP/J	ENSMUSG00230055071	pseudogene	Chr17:25070369-25070740 (+)
NOD/ShiLtJ	ENSMUSG00190054123	pseudogene	Chr17:21559979-21560350 (+)
NZO/HlLtJ	ENSMUSG00225054379	pseudogene	Chr17:26990334-26990705 (+)
PWK/PhJ	ENSLUMG00010053335	pseudogene	Chr17:21046518-21046890 (+)
SPRET/EiJ	ENSMSPG00010051011	pseudogene	Chr17:22364327-22364382 (+)
WSB/EiJ	ENSIUOG00005051235	pseudogene	Chr17:22303905-22304276 (+)

Homology

• Gene Tree
  Cox7c-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Cox7c-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000057580 (Evidence)
• NCBI Gene
  117997402

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057580	Ensembl Gene Model | MGI Sequence Detail	192	C57BL/6J
transcript	ENSMUST00000078252	Ensembl | MGI Sequence Detail	192	Not Applicable

Other
Accession IDs

MGI:6363025

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044